Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f04r
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   159   3e-39
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    48   9e-06
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    28   8.0  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    28   8.0  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score =  159 bits (385), Expect = 3e-39
 Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 3/246 (1%)
 Frame = -2

Query: 734 AIIMRNLMRRXGYTQYYIQGGDFGHMIGSHIATIFPSEVLGFHTNF-PANXXXXXXXXXX 558
           A + R LM R GY ++Y+QGGD+G +I S +  ++P  V+  H N  PA           
Sbjct: 206 ARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQNVMALHLNMMPAMPGANALGTFY 265

Query: 557 XXXXXW-PSYFGNGIEDRMYPLKDKLEFYLEETGYSHLQSTKPDTIGIVLTDSPVALGSY 381
                  PS   +    + +    K    + ETGY HLQ+TKPDT G  L DSP+ L +Y
Sbjct: 266 DILGWLIPSTLSSKEIQKTHNPFSKFGLLIVETGYMHLQATKPDTAGTSLNDSPIGLAAY 325

Query: 380 ILDRFMIFTNHTNKFEDEGGIDKYYDFDKLLDNIMLYWASGSITTSLRIYKETFAGSRLN 201
           I+++F  +TN  N+   +GG++K +  D+LL  +M+YW +G+I +S R Y+E F   R  
Sbjct: 326 IIEKFSTWTNTENRALPDGGLNKRFTNDELLTIVMIYWTNGNIVSSQRFYREMFLDRRCE 385

Query: 200 NLAQVPTSVPTWALRLKYELFQH-PDYMLRWKYTNLLGSTNLDYGGHFAAFERPKDFSDD 24
            L +   S PT       EL+   P  + R  Y N+   T +D  GHFAAFE PK  +  
Sbjct: 386 ALGKRYVSTPTAHASGLNELYDRTPIEVSRHSY-NITHYTEIDM-GHFAAFEAPKPLAQS 443

Query: 23  VFKAVK 6
           VFK VK
Sbjct: 444 VFKFVK 449


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 52/253 (20%), Positives = 97/253 (38%), Gaps = 10/253 (3%)
 Frame = -2

Query: 734 AIIMRNLMRRXGYTQYYIQGGD-FGHMIGSHIATIFPSEVLGFHTNFPANXXXXXXXXXX 558
           A I+  LM R     Y++ G + +G  + + +++++P+ + G H +   N          
Sbjct: 206 ARIIAKLMYRLNLNNYFVHGTEGYGSDVATLLSSLYPTRIAGLHLS---NPFVNPTFSTF 262

Query: 557 XXXXXWPSYFGNGIEDRMYPL-----KDKLEFYLEETGY----SHLQSTKPDTIGIVLTD 405
                     G   EDR         KD  +   +   Y         T     G    +
Sbjct: 263 TLAKYALKAMGQKDEDRENQENRETGKDNRDQMTDLADYFKQDKFAYPTNSQAFGAAFLN 322

Query: 404 SPVALGSYILDRFMIFTNHTNKFEDEGGIDKYYDFDKLLDNIMLYWASGSITTSLRIYKE 225
           SP     YI  R+       + F  E  +++ +  D++   I LYW + ++ ++L I   
Sbjct: 323 SPSGTAKYIESRW----KQLSTFFAETNLNELFTMDEIATEIYLYWLTDTLPSALTILDS 378

Query: 224 TFAGSRLNNLAQVPTSVPTWALRLKYELFQHPDYMLRWKYTNLLGSTNLDYGGHFAAFER 45
           +F    +   +QV   +PT     K   ++    +L  +Y NL   + L  GG F   + 
Sbjct: 379 SFNFESVWLSSQV--RIPTAVSYSKQTPWRCSKDILEDRYLNLTRISELPKGGMFHHLQD 436

Query: 44  PKDFSDDVFKAVK 6
               ++D+F  V+
Sbjct: 437 GHKIAEDIFSFVE 449


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 677 GGDFGHMIGSHIATIFPSEVLGFHTNF 597
           GG FG  +G  I T+    + GFH+ F
Sbjct: 85  GGQFGFFLGLSIITLIQMVLYGFHSAF 111


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 505 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 564

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 565 SAQAFVDPIT 574


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 468 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 527

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 528 SAQAFVDPIT 537


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 505 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 564

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 565 SAQAFVDPIT 574


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 207 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 266

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 267 SAQAFVDPIT 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,673
Number of Sequences: 27780
Number of extensions: 414115
Number of successful extensions: 1221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)