Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f04r
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family pr...    30   1.9  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    28   7.5  
At3g11860.1 68416.m01454 expressed protein ; expression supporte...    27   9.9  
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    27   9.9  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    27   9.9  

>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 651

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +3

Query: 582 GCVSWEIRVEAKYF*GEDRGDMGSDHVPEIAALNVVL 692
           G VSW +RV A     EDRGD G   +P IAA   +L
Sbjct: 113 GDVSWLLRVSAP---AEDRGDAGYLGLPPIAANEPIL 146


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 667 SGT*SDPISPRSSPQKYLASTRISQLTHPNCL 572
           +G   + IS R   QKY +STR SQ   P C+
Sbjct: 563 TGLNEETISNRLKQQKYKSSTRSSQEVEPCCV 594


>At3g11860.1 68416.m01454 expressed protein ; expression supported
           by MPSS
          Length = 252

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 505 ILSSMPLPKYEGHNNPPRSQVNKDNLDVLAG--KFVWKPSTSEGKI 636
           ++ S+PLP++   + P  S+   +  DVLA   K   KP++S+ ++
Sbjct: 109 VVPSLPLPEHFIRHKPETSESQAELRDVLADPHKTTHKPASSQSQV 154


>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
           (SYD) similar to transcriptional activator HBRM [Homo
           sapiens] GI:414117; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain; identical to cDNA putative
           chromatin remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 491 LSEDTFC-PQCRYRNTKATTIRP 556
           LS D F  PQC +++++AT IRP
Sbjct: 235 LSSDAFTTPQCGWQSSEATAIRP 257


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
           (SYD) similar to transcriptional activator HBRM [Homo
           sapiens] GI:414117; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain; identical to cDNA putative
           chromatin remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 491 LSEDTFC-PQCRYRNTKATTIRP 556
           LS D F  PQC +++++AT IRP
Sbjct: 235 LSSDAFTTPQCGWQSSEATAIRP 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,618
Number of Sequences: 28952
Number of extensions: 395029
Number of successful extensions: 1021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)