Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f04f
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           30   1.3  
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    27   9.2  

>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 370 YRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFKYKFRERVKFLNKYDHFLTNIQG 540
           Y+L E+  KS+    +T G+ S   ++ F++ + K  F+     +  + HF   +QG
Sbjct: 31  YKLKEKWAKSYMRNVFTLGMRSTQLSESFNNDL-KIHFKSDFDIIRFFKHFERVVQG 86


>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 466  IFKYKFRERVKFLNKYDHFLTNIQGLDIHFVRVKPKADKMLRWYPFYF 609
            +FK    ER +  NK    L  + G D   VRV    DK L   P +F
Sbjct: 967  LFKRLREERQERANKLKTSLDEVPGADGLVVRVVSSVDKKLEVKPHFF 1014


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,843
Number of Sequences: 37544
Number of extensions: 252402
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)