Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f04f
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_4595| Best HMM Match : TSP_1 (HMM E-Value=2.5e-05)                  27   9.4  

>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 280 DNNTHDTRIRPYRVIFSDAMESEIRALFEDYRLMERKIK 396
           D N  +     Y V  S+A   ++ ++FE+YR M R+++
Sbjct: 802 DMNAEEPEDNTYDVETSEAYNYQVSSIFEEYRFMPRQVE 840


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 369 LPSHGEEDKELQKHGLDLWRSFRCVCTVLL 458
           LP+  E+ K   KHGLDL R + C C +L+
Sbjct: 158 LPAAREDFKTCAKHGLDL-RFYCCTCELLM 186


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 214 VYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPY 315
           VY S   +P +PK   N  +  DN TH T+  P+
Sbjct: 172 VYSSAMGLPRIPKKKKNTFYHNDNKTHSTQTGPW 205


>SB_4595| Best HMM Match : TSP_1 (HMM E-Value=2.5e-05)
          Length = 143

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 472 KYKFRERVKFLNKYDHFLTN 531
           K+K RE+  F NKYDH   N
Sbjct: 119 KFKTREKKPFQNKYDHSTRN 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,440,165
Number of Sequences: 59808
Number of extensions: 311169
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)