Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f04f
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    54   8e-08
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    48   7e-06
Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   6.2  
AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 23/92 (25%), Positives = 52/92 (56%)
 Frame = +1

Query: 295 DTRIRPYRVIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFK 474
           +T I+P++V    ++  +++   ++ R+    ++   +  + YG +S    +   +W+ K
Sbjct: 46  NTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDD--FYYGFNSKQLLKLRDYWLNK 103

Query: 475 YKFRERVKFLNKYDHFLTNIQGLDIHFVRVKP 570
           Y +R++   +N++  F T I+GL +HF+ VKP
Sbjct: 104 YDWRKQEATINQFPQFKTEIEGLQVHFLHVKP 135


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
 Frame = +1

Query: 163 SYLFVVKALFTIYGIYL-VYVSLTNVPDLPKVDVNLRWGVDN-NTHDTRIRPYRVIFSDA 336
           S+ F    + +I+ I L +Y+   + P L ++D +  W +D+    D  I  + +   D 
Sbjct: 3   SWFFFSVVVISIFSILLSIYIHKPDFPPL-EIDPDDYWKLDDPEKDDDTIYSFTI---DI 58

Query: 337 MESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFKYKFRERVKFLNKYD 516
            ESE+    E       K++S +     Y  + D +       +  + +++   FLN + 
Sbjct: 59  KESEVSNFKE-------KLESERFLPTLYDTNYDNYLNELKQVLLGFNWKQHQHFLNTFK 111

Query: 517 HFLTNIQGLDIHFVRVK-PKADKMLRWYP 600
            + T I+GL IHF+RV  P  DK  R  P
Sbjct: 112 QYKTEIEGLKIHFLRVSTPPKDKKSRVVP 140


>Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical
           protein F58B4.5 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 346 EIRALFEDYRLMERKIKSFKNTAWTYG-----VHSDAFAQFF 456
           E+  +++DY    + IK+FKNT   +G      HSD ++  F
Sbjct: 241 EMLKIYKDYYFQPQMIKNFKNTCQFFGYKPVLTHSDLWSSNF 282


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 342 FHRVTKYHP-VGPYSGVVRVIIDAPS*IDVDFGQIRNVRQRHVHQINTVNR 193
           F R   Y   +G Y    + II+APS ++       +    H H+INT+NR
Sbjct: 62  FEREMAYRTEMGLYYSYYKTIINAPSFLEGVQEITHDTVTEHGHEINTLNR 112


>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 211 LVYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPYRV 321
           + Y   T++   P  + N  +G+DN  H +  +PYR+
Sbjct: 248 ITYDKYTDIIGTPGKETNFWFGLDNMNHLSGAKPYRL 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,345
Number of Sequences: 27780
Number of extensions: 241412
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)