Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f03r
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    49   6e-07
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    38   0.002
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    32   0.074
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    31   0.23 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.6  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    27   2.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   4.8  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   4.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   6.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   8.5  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
 Frame = -2

Query: 666 HGDHSS-HNMGMSMTFHGGYIET-ILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRK 493
           HG +S+  +  M MTF+  Y    I+F  W++  + +F+ S  AI I+  L+E L+    
Sbjct: 3   HGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYLFERLR---- 58

Query: 492 HLLWKTYAGLQYCAVAPPDKGVANICAADEPQIVQPIPHMLERNVPTMMSTAHAWQTILH 313
                ++  L+        +G A           Q    +L  +  ++ S        L+
Sbjct: 59  -----SFTSLKETEF---QRGYAG----------QQSEGLLTHHSKSLKSGRPFRLCALY 100

Query: 312 GVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGY 214
            VQ++ SY LMLV MTYN ++  A+ +G+A GY
Sbjct: 101 AVQLVFSYFLMLVAMTYNAYVILAIAIGAAFGY 133


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 336 HAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFG 202
           H  ++  + VQ +V+Y+ ML+ M YN ++   +  G+  GYFLFG
Sbjct: 205 HFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFG 249


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 5   YIFLLYNWYKSFNSTSYNLSSYNMDFY 85
           Y  +L  WY  FN T   L S+NMD+Y
Sbjct: 230 YTGILERWYVLFNITMLRLVSFNMDYY 256


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
 Frame = -2

Query: 447 APPDKGVANICAADEPQIVQPIPHMLER--NVPTMMSTAH-AWQTILHGVQV-LVSYMLM 280
           APP+ G  N  + +E +I++P      R   + T ++  H  W++  H  ++   S    
Sbjct: 31  APPNDGEQNETSMEEMEIIEPPSEDSSRFPLLRTKLAAIHEGWESACHSFEIRFASTFHR 90

Query: 279 LVF-MTYNTWLCAAVVLGSATGYF--LFGWR------ESVVVDFTEHC 163
           + F   Y   +   ++L S  GYF  +  WR      E V++++ + C
Sbjct: 91  IPFQFLYLAVIATVIILASYYGYFDGVPAWRSVHHYGEDVLLNYIKGC 138


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
 Frame = -2

Query: 714 VHNTDMNDHNVHTFSGHGDHSS--HNMGMSMTFHGGYIETILFSWWNVTEVGEFVGSFFA 541
           + N D + H  H    H  H    H +  +M   G  + TIL  W++ T          A
Sbjct: 565 LQNLDNDHHCHHHHENHNMHGIFLHIIADTMGSVGVIVSTILIQWFSWTGFDPLASLIIA 624

Query: 540 IFIIALLYEGLKYYRKHLLWKTYAGLQY 457
             I   +   +K   K+LL  T    +Y
Sbjct: 625 ALIFVSVLPLIKDSAKNLLSVTDPESEY 652


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = -2

Query: 672 SGHGDHSSHNMG-----MSMTFHGGYIETILF--SWWNVTEVGEFVGSFFAIFIIALLYE 514
           SG G  SS N       MSM ++  YI    F    W++    +F GS   IF  A+  E
Sbjct: 12  SGMGMGSSSNSSAATCRMSMLWNW-YIHDSCFLAKSWHINTGNKFAGSIIGIFFFAVAIE 70

Query: 513 GLKYYRK 493
           GL   ++
Sbjct: 71  GLSLVQR 77



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -2

Query: 345 STAHA--WQTILHGVQVLVSYM----LMLVFMTYNTWLCAAVVLGSATGYFLF 205
           ST H   WQ ++        Y+    LML+ M++N +      +G+  G+FLF
Sbjct: 103 STVHVTVWQQLIRAAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLF 155


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +3

Query: 618 RETSWTCPYCGYCDHHGLKKCGHC 689
           R   W CP CG+ +      C  C
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRC 366


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 711 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETILFS 589
           +N +   + ++T  G GD S+  + ++ T+H G +   LF+
Sbjct: 585 YNINYPPYALNTEQGEGDLSNLGVSVNATYHDGTVRYNLFN 625


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 711 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETI 598
           H+T   DH+ H   GH DH SH+   + +     ++ I
Sbjct: 17  HHTHDYDHHNHDHHGH-DHHSHDSSSNSSSEAARLQFI 53


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 735 NSSYTRIVHNTDMNDHNVHTFSGHGDHSSHNM 640
           N +   +V +++ +D+NV T S   DH   NM
Sbjct: 182 NDNAVIVVSDSESDDNNVRTKSSLNDHDKVNM 213


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 145 EHFSSVTMFSEVNNYRFAPTKE 210
           EH S    F  VN+YR  P +E
Sbjct: 388 EHISIAKSFGRVNDYRIVPDQE 409


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 391  YNLWFICCTNIGNSLVWW 444
            Y ++ +C   IG S VWW
Sbjct: 2017 YEIYSVCAFFIGASFVWW 2034


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 618 RETSWTCPYCGYCDHHGLKKCGHC 689
           R    TCP CGY D  G  +C  C
Sbjct: 357 RYVEGTCPKCGYDDARG-DQCDGC 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,455
Number of Sequences: 5004
Number of extensions: 71895
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)