Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f03r
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0273 + 16292553-16293002 58 1e-08
08_02_0896 + 22355097-22355627 49 4e-06
05_04_0365 + 20659846-20660301 40 0.002
01_06_0859 + 32519587-32520039 36 0.025
01_06_0858 + 32516641-32517105 35 0.077
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 30 2.2
04_03_0802 - 19830614-19831275,19831426-19831507 29 3.8
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 5.1
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 28 6.7
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 8.8
>09_04_0273 + 16292553-16293002
Length = 149
Score = 57.6 bits (133), Expect = 1e-08
Identities = 45/144 (31%), Positives = 69/144 (47%)
Frame = -2
Query: 636 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 457
M MTF+ G TILF W ++ S A+ + + Y+ L+ +R + K AG +
Sbjct: 2 MHMTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRV--KLLAGAKP 59
Query: 456 CAVAPPDKGVANICAADEPQIVQPIPHMLERNVPTMMSTAHAWQTILHGVQVLVSYMLML 277
++ PP A+ AA P + +P P ++TA L GV + Y+LML
Sbjct: 60 ASIPPP----ASSDAARAPLL---LPSSAAGRWPARLATAG-----LFGVNSGLGYLLML 107
Query: 276 VFMTYNTWLCAAVVLGSATGYFLF 205
M++N + AVV+G A GY F
Sbjct: 108 AVMSFNGGVFVAVVVGLAAGYLAF 131
>08_02_0896 + 22355097-22355627
Length = 176
Score = 48.8 bits (111), Expect = 4e-06
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Frame = -2
Query: 636 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL-LWKTYAGLQ 460
M M+F+ G TILF W + ++ S A+F+ A LY+ L+ R L + +
Sbjct: 2 MHMSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLRAGRRHRAGG 61
Query: 459 YCAVAPPDKGVANICAADEPQIVQPIPHML-------ERNVPTMMSTAHAWQTILHGVQV 301
A G A+D ++ L R + + A A L G+
Sbjct: 62 GGGAASSAAGPVVPAASDARALLSAAGGRLGLGLGLGRRWMKEPRAAASAAAAALFGLSA 121
Query: 300 LVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 205
V Y+LML M++N + AVV G A G+ F
Sbjct: 122 AVGYLLMLAVMSFNGGVFLAVVAGLAAGHLAF 153
>05_04_0365 + 20659846-20660301
Length = 151
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -2
Query: 339 AHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 205
A A +T +H V+V V+Y++ML M++N + A+V G A G+ F
Sbjct: 83 AAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127
>01_06_0859 + 32519587-32520039
Length = 150
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 318 LHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 205
+H V+V ++Y+LML M++N + A V G A G+ F
Sbjct: 93 VHAVRVGLAYLLMLALMSFNVGVLLAAVAGHAAGFLAF 130
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 636 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 508
M MTF+ G ILF+ W G + + A+F +A+L E L
Sbjct: 28 MHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFL 70
>01_06_0858 + 32516641-32517105
Length = 154
Score = 34.7 bits (76), Expect = 0.077
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 372 LERNVPTMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 205
L R P A A +H V+V V+Y+LML M++N + V G A G+ F
Sbjct: 80 LARRAPAAGGLARA---AVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 132
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 633 TCPYCGYCDHHGLKKCGHCDHSYLC--CAQFWY 725
TC CG + +C +CD+ Y C C WY
Sbjct: 436 TCHRCGMKKAARIVQCKNCDNRYFCNSCINKWY 468
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 310 PMKYRLPCVCCAHHRR 357
P+ Y +PC CC H RR
Sbjct: 137 PVPYPVPCKCCPHRRR 152
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Frame = +3
Query: 624 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 716
+SW CP C C D + L C CD +Y C Q
Sbjct: 183 SSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQ 220
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 369 QAYEELAVQFVVHLLHKYWQLPCLVVLRHNTVVLHMSS 482
QA+++ ++ + + H+ Q PC VVL +V H SS
Sbjct: 463 QAFQQREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSS 500
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 543 QKMIPQIHQLLLRSTKRRE*FQCSHRETSWTCPYCGYCDHHGLKKCG 683
Q ++ + + L++ KR + CS+ W PYC D G CG
Sbjct: 430 QSLVDTLDKALVKYKKRIQHAPCSNTFRVWCHPYCSRQD-PGTSTCG 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,766,549
Number of Sequences: 37544
Number of extensions: 441992
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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