Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f03r
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      33   0.24 
SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.32 
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             29   3.0  
SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)                   29   3.0  
SB_35884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   5.7  
SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)                       28   9.0  
SB_51848| Best HMM Match : DUF1135 (HMM E-Value=6.4e-09)               28   9.0  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   23   9.7  

>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 576 TEVGEFVGSFFAIFIIALLYEGLKYYRKHL 487
           T     +GS  A+FI+A+LYEGLK  R+ L
Sbjct: 122 TSTPGMIGSCIAVFILAVLYEGLKVSREML 151


>SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 160 VTMFSEVNNYRFAPTKEEVPCR*S*YYSSAQPCVVSHKNQHQHIT 294
           + +F  V+N    P+KE+VP   +     AQP ++ H+++HQ +T
Sbjct: 47  MAVFINVHNLGKFPSKEKVPEASTQRNCYAQPTIIRHEDKHQKVT 91


>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 735 NSSYTRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVGEFV 556
           N++    +HNT    HN    +   + + HN   S T H     TI  +WW +T    F 
Sbjct: 94  NTTRHNSLHNTTR--HNSLPNTTRHNTTRHNSLNSTTMHNSLPNTIRTTWWPITFFSSFS 151

Query: 555 GSF-FAIFIIALLYEGLKYYRK 493
             + +A      +   L++YRK
Sbjct: 152 FMWNWAKLTTWSVGTDLRFYRK 173


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 324  TILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 205
            T +  V V+VS + + +   Y TWL   V  GS   +FLF
Sbjct: 1349 TFVFAVCVIVSNLKLALVTHYWTWLTHVVTWGSILTFFLF 1388


>SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)
          Length = 143

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 324 TILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 205
           T +  V V+VS + + +   Y TWL   V  GS   +FLF
Sbjct: 33  TFVFAVCVIVSNLKLALVTHYWTWLTHVVTWGSILTFFLF 72


>SB_35884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +1

Query: 253 PCVVSHKNQHQHITN*HLNPMKYRLPCVCCAHHRRNISFKHMRNWLYNLWFIC 411
           P +V   N H+ ++  H  P+       C  H R  I   + ++    L ++C
Sbjct: 22  PLLVRSSNTHRRVSRIHSEPLLIESSTRCAVHQRNTIRQANRQHTALRLKYLC 74


>SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 363 NVPTMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFG--WRES 190
           N+  M ST    + I H V   V+Y L+ + + Y   +  +++      YFL    W E 
Sbjct: 204 NISNMSSTQVTQEAIEHRVAATVAYSLVALAICYIPIIVVSILRSLGNNYFLLTAIWMEM 263

Query: 189 VVV 181
           +++
Sbjct: 264 LLL 266


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 23.8 bits (49), Expect(2) = 5.7
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 366 RNVP---TMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLG 229
           +N+P   T   T H WQ++L  + +   Y    V+ T    L   +V G
Sbjct: 286 KNIPLIATRSITTHLWQSLLRAILLAFKYFYG-VYTTSRDCLWRRIVYG 333



 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 441 PDKGVANICAADEPQIVQPIPHMLERNV 358
           P  G  ++C A    +VQP  H L + +
Sbjct: 235 PSVGRFSVCVAQSQIVVQPKHHELTKRI 262


>SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 88  LSSIRNKVFTTNTNHHYNCEHFSSVTMFSEVNNYRFAPTKEEVPC 222
           L S+ N +  T   H YN    +   +  + N YRFA    + PC
Sbjct: 87  LKSVVNNM--TTVQHGYNLRSGNEKIIGPQANTYRFARVVHKAPC 129


>SB_51848| Best HMM Match : DUF1135 (HMM E-Value=6.4e-09)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 381 ELAVQFVVHLLHKYWQLPCLV 443
           +L + F+ HLLH  +Q+PC +
Sbjct: 272 QLLIVFIKHLLHDRFQVPCTI 292


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 441 PDKGVANICAADEPQIVQPIPHMLERNV 358
           P  G  ++C A    +VQP  H L + +
Sbjct: 8   PSVGRFSVCVAQSQIVVQPKHHELTKRI 35



 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -2

Query: 366 RNVP---TMMSTAHAWQTILHGVQVLVSYMLML 277
           +N+P   T   T H WQ++L  + +   Y   L
Sbjct: 59  KNIPLIATRSITTHLWQSLLRAILLAFKYFCEL 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,584,249
Number of Sequences: 59808
Number of extensions: 543444
Number of successful extensions: 1412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)