Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f03f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    36   0.005
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    30   0.23 
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    28   1.2  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    27   1.6  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   2.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   3.7  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   8.7  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.7  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +2

Query: 389 HGDHSS-HNMGMSMTFHGGYIET-ILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYY-- 556
           HG +S+  +  M MTF+  Y    I+F  W++  + +F+ S  AI I+  L+E L+ +  
Sbjct: 3   HGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYLFERLRSFTS 62

Query: 557 -RKHLLWKTYAGLQ 595
            ++    + YAG Q
Sbjct: 63  LKETEFQRGYAGQQ 76


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
 Frame = +2

Query: 245 HAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSS--HNMG 418
           H   + H  +H+ +  H    N   +   +  + N D + H  H    H  H    H + 
Sbjct: 534 HENSQEHHHEHNHNHDHIHKYNEKCDHE-SISLQNLDNDHHCHHHHENHNMHGIFLHIIA 592

Query: 419 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 598
            +M   G  + TIL  W++ T          A  I   +   +K   K+LL  T    +Y
Sbjct: 593 DTMGSVGVIVSTILIQWFSWTGFDPLASLIIAALIFVSVLPLIKDSAKNLLSVTDPESEY 652


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 236 DMGHAGHEHHGIDHSRH 286
           D  H  H+HHG DH  H
Sbjct: 21  DYDHHNHDHHGHDHHSH 37



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 344 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETI 457
           H+T   DH+ H   GH DH SH+   + +     ++ I
Sbjct: 17  HHTHDYDHHNHDHHGH-DHHSHDSSSNSSSEAARLQFI 53


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 383 SGHGDHSSHNMG-----MSMTFHGGYIETILF--SWWNVTEVGEFVGSFFAIFIIALLYE 541
           SG G  SS N       MSM ++  YI    F    W++    +F GS   IF  A+  E
Sbjct: 12  SGMGMGSSSNSSAATCRMSMLWNW-YIHDSCFLAKSWHINTGNKFAGSIIGIFFFAVAIE 70

Query: 542 GLKYYRK 562
           GL   ++
Sbjct: 71  GLSLVQR 77


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 236 DMGHAGHEHHGIDHSRHIGH 295
           D+ H GH HH   H  H  H
Sbjct: 293 DLHHEGHHHHHHHHHHHHSH 312


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 201 TRWTNIMNTTIWIWAMLGMNTM 266
           T W  ++N T WI+++L  N +
Sbjct: 227 TNWLGLLNGTGWIYSLLNQNVL 248


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -1

Query: 437 RETSWTCPYCGYCDHHGLKKCGHC 366
           R   W CP CG+ +      C  C
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRC 366


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 344 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETILFS 466
           +N +   + ++T  G GD S+  + ++ T+H G +   LF+
Sbjct: 585 YNINYPPYALNTEQGEGDLSNLGVSVNATYHDGTVRYNLFN 625


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 437 RETSWTCPYCGYCDHHGLKKCGHC 366
           R    TCP CGY D  G  +C  C
Sbjct: 357 RYVEGTCPKCGYDDARG-DQCDGC 379


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 338 IVHNTDMNDHNVHTFSGHGDHSSHNM 415
           +V +++ +D+NV T S   DH   NM
Sbjct: 188 VVSDSESDDNNVRTKSSLNDHDKVNM 213


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 443 YIETILFSWWNVTEVGEFVGSF 508
           +I+  +F W+ +   GE++G+F
Sbjct: 248 WIKGAIFLWYGILSFGEYLGAF 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,272
Number of Sequences: 5004
Number of extensions: 57215
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)