Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f03f
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.4  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -1

Query: 428 SWTCPYCGYCDH--HGLKKC 375
           ++TCP CG C    H +K C
Sbjct: 72  AYTCPICGACGDIAHTVKYC 91


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 559 SIIFKAFIEQSYNKYCKK 506
           S+ FK+ I +++   CKK
Sbjct: 60  SVFFKSHITEAFQTQCKK 77


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 559 SIIFKAFIEQSYNKYCKK 506
           S+ FK+ I +++   CKK
Sbjct: 60  SVFFKSHITEAFQTQCKK 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 287 IGHQMPINGLLNSSYNRIVHNTDMNDHNVH 376
           + ++  +N     S+  ++HN  +N  ++H
Sbjct: 558 VSNEQFLNTAATLSFCEMIHNAQVNKRSIH 587


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 1   DNFSCGLQRTTYSIFIK 51
           D+ SC LQ T +  FIK
Sbjct: 117 DSLSCWLQMTKHHNFIK 133


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +2

Query: 230 NMDMGHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDM--NDHN 370
           N D  H  H H+   HS    +Q       N+ +N   H++    N HN
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQN------NNQHNDQAHHSSKSNNRHN 461


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/16 (31%), Positives = 7/16 (43%)
 Frame = +3

Query: 195 PRTRWTNIMNTTIWIW 242
           P T W  +   + W W
Sbjct: 160 PPTNWVGVFGGSAWSW 175


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/16 (31%), Positives = 7/16 (43%)
 Frame = +3

Query: 195 PRTRWTNIMNTTIWIW 242
           P T W  +   + W W
Sbjct: 160 PPTNWVGVFGGSAWSW 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,439
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)