Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f02r
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    29   0.60 
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    28   1.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    28   1.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   3.2  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   4.3  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   5.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   7.4  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   7.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   7.4  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   9.8  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   9.8  

>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 261 KHNYNLNCLINKTFKERILIKLCEFDAERFTSISDIIN 148
           KH  +L    N+  +E+++ +LC   A+R   I++I+N
Sbjct: 583 KHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILN 620


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 676 LLSMIVISEVAISRVAELDFLAVCVSTD 593
           +++M VI E  ++R AE+ +  VC++TD
Sbjct: 195 IINMSVIPEAKLAREAEIAYQMVCMATD 222


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 508 ISLHSTVLHFKFLINFPRNCVAIISHLHRPLTHTPPGNPILR 633
           I+ H  VLH  F     +NC   I  ++R ++ TP G   LR
Sbjct: 289 IAQHEEVLHNDFARMLDQNCSEDIIRMYRLMSRTPNGLQPLR 330


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 657 ITIIERRSIFIKISYIVVGYNVALASSVDAPP 752
           +TIIE R++ +   ++   Y V++ +S+ APP
Sbjct: 71  VTIIEARNLKLPSGHVPANYGVSIDNSLLAPP 102


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 55  SHIGILNIIILYLFCTE 5
           S +G L+II++YLFC E
Sbjct: 301 SFMGFLSIILIYLFCEE 317


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 625 LDFLAVCVSTDDANAILLQRNFWENL 548
           LDFL  C  +DD+N+I +   F  NL
Sbjct: 240 LDFLESCFRSDDSNSITMASLFIGNL 265


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 139 VCEVIHPLETANYRYIPLIFVKYSVSHESHIGILNIIILYLFCTE 5
           V E+I  + T +YR I  +F  +S  HE       I+I  LF  +
Sbjct: 162 VQELIPQIGTGHYRAIETLFGCHSYGHEVDRWTFGILIAELFSNQ 206


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -1

Query: 806 KDVIAEDAISRVAELDFXRWXVNXRCQCDIIANHNIADLDEDRSSLNDCNIRGCD 642
           KDVI  D  S++   DF +   +   + + + N + A++DE R+SL+   IRG D
Sbjct: 362 KDVITVDH-SKINYEDFKK---DFYVEPEELKNLSPAEVDELRASLDGIKIRGID 412


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 620 FPGGVCVNGRCKC 582
           FP GVC NGR  C
Sbjct: 214 FPEGVCTNGRALC 226


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 606 HTARKSNSATRLIATSDITIIERRSIFIKISYIVVGYN----VALASSVDAPPPEIQFCD 773
           H   K + A  L +++D T +   +  +   Y+V+  N    +ALA    A PP + F D
Sbjct: 76  HRQAKKSKAIVLYSSTD-TRLRANAACLLACYMVLVQNWPPHLALAPLAQAEPPFLGFRD 134

Query: 774 TTDRILGYYI 803
               +  YYI
Sbjct: 135 AGYAVSDYYI 144


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 95  YSTDFCQVLCFT*IPYWHFKHYNTIS 18
           Y+  FC V  F  IP   + HY TIS
Sbjct: 170 YAFTFCVVKSFQNIPVGAYVHYPTIS 195


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 536 KCNTVECNEICHRLNYAGGICKGNECSC 453
           KC   +C E C   + A   CK + C C
Sbjct: 20  KCGCQDCKESCGCKSSAVDNCKCSSCKC 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,651
Number of Sequences: 5004
Number of extensions: 69453
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)