Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f02r
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               32   0.65 
SB_21922| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  29   4.6  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -1

Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAG-GICK 471
           CD+ C       GVC +G+C CD        K  R  KC T+ C    + ++ +G G+C 
Sbjct: 178 CDKECDS----HGVCRDGKCSCD--------KGYRGAKCETIGCPG--NNVDCSGHGVCL 223

Query: 470 G--NECSCY 450
               EC CY
Sbjct: 224 SVTQECDCY 232


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 680 RSSLNDCNIRGCDQSC-RRIGFPGGVCVNGRC--KCD 579
           R  L  CN  GC  +C R +G+    C +GRC   CD
Sbjct: 128 RKCLQTCNGGGCHMTCPRGVGYCHQTCAHGRCFMSCD 164



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 677 SSLNDCNIRG--CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEIC 504
           S L  CN +G  C Q C      GG C+N  C   +   Q  G     ++CN ++C++IC
Sbjct: 244 SCLFRCNSKGGRCWQDCT-----GGKCLNMFCNSRM-CIQSCGGGGCKMRCNALKCHQIC 297


>SB_21922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -1

Query: 557 GKFIRNLKCNTVEC-----NEICHRLNYAGGICKGNECS 456
           G+F ++ +  T++C     N IC + NY G IC GN  S
Sbjct: 8   GQFSKDSRGGTIKCPNQIINTICVKQNYFGVICMGNNFS 46


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/68 (30%), Positives = 24/68 (35%)
 Frame = -1

Query: 656 IRGCDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAGGI 477
           I GC   C      GG C+NG+C C   A  F G       C    C+  C       G 
Sbjct: 271 IAGCLYPCMN----GGSCINGKCVC---AVGFTGN-----TCEERLCDPPCQN----SGT 314

Query: 476 CKGNECSC 453
           C    C C
Sbjct: 315 CNNGTCIC 322


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 653  RGCDQSCRRIGFPGGVCVNGRCKCDIIA 570
            RGC+  C       G CVNG C CD +A
Sbjct: 1389 RGCNVECSG----HGQCVNGACACDTLA 1412


>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/89 (22%), Positives = 34/89 (38%)
 Frame = -1

Query: 647  CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAGGICKG 468
            C  SC+ +  PGG C   +    ++    +     +  C T+E    C   +   G    
Sbjct: 1427 CTLSCQTLA-PGGKCTT-KPSFTVVNGACVSVPFCSQHCQTLEPGGSC---SVEAGYVID 1481

Query: 467  NECSCY*VNIALQNASELLELKVCKKYFY 381
            N   CY V   +    +  + K C KY++
Sbjct: 1482 NNGMCYDVRFCVDKCHDFADPKDCSKYYH 1510


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
 Frame = -1

Query: 662 CNIRGCDQSCRRIGFPGGVC---VNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLN 492
           CN   C   C+     GG C   V+  C+C            R   C   EC   C  LN
Sbjct: 429 CNQNPCPTICKVPCENGGTCIDPVSNTCQCP--------PNWRGATCKQAECVPEC--LN 478

Query: 491 YAGGICKGNECSC 453
             GG+C   +C C
Sbjct: 479 --GGVCVNRQCQC 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,620,387
Number of Sequences: 59808
Number of extensions: 512474
Number of successful extensions: 3498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3492
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)