Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f02r
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical ... 31 0.75
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 30 1.7
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.7
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.7
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.7
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.7
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 30 1.7
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 30 1.7
Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 28 7.0
U64601-8|AAB04576.2| 413|Caenorhabditis elegans Hypothetical pr... 28 7.0
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 28 7.0
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 9.3
>AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical
protein C16C4.6 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 208 YSFFKCFIY*TIQIVIMFNAFISIGIHMCNTLKIIFQFKIIVQMCLQEKDIKI 366
++F CF T+Q IMFN +I + H+ N + +F +Q+ + EK +K+
Sbjct: 299 FAFQFCFFV-TLQQFIMFNVYIYLRKHIKNCSNNLRKFPSCLQLPIPEKCLKL 350
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLN-YAGGIC- 474
C+ +C + G CV+G+C C A F G+ C+ C +C ++GGIC
Sbjct: 317 CESNCNQ----RGECVHGKCHC---APGFTGR-----TCDEAVCPVVCSGNGVFSGGICV 364
Query: 473 -----KGNEC 459
KG EC
Sbjct: 365 CKSGFKGKEC 374
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRL 495
CD+ C G+ G C+ +CKC AT + C+ E CH L
Sbjct: 803 CDKPCED-GYYGPDCIK-KCKCQGTATSSCNRVSGACHCHPGFTGEFCHAL 851
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRL 495
CD+ C G+ G C+ +CKC AT + C+ E CH L
Sbjct: 803 CDKPCED-GYYGPDCIK-KCKCQGTATSSCNRVSGACHCHPGFTGEFCHAL 851
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRL 495
CD+ C G+ G C+ +CKC AT + C+ E CH L
Sbjct: 803 CDKPCED-GYYGPDCIK-KCKCQGTATSSCNRVSGACHCHPGFTGEFCHAL 851
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRL 495
CD+ C G+ G C+ +CKC AT + C+ E CH L
Sbjct: 803 CDKPCED-GYYGPDCIK-KCKCQGTATSSCNRVSGACHCHPGFTGEFCHAL 851
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLN-YAGGIC- 474
C+ +C + G CV+G+C C A F G+ C+ C +C ++GGIC
Sbjct: 259 CESNCNQ----RGECVHGKCHC---APGFTGR-----TCDEAVCPVVCSGNGVFSGGICV 306
Query: 473 -----KGNEC 459
KG EC
Sbjct: 307 CKSGFKGKEC 316
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLN-YAGGIC- 474
C+ +C + G CV+G+C C A F G+ C+ C +C ++GGIC
Sbjct: 441 CESNCNQ----RGECVHGKCHC---APGFTGR-----TCDEAVCPVVCSGNGVFSGGICV 488
Query: 473 -----KGNEC 459
KG EC
Sbjct: 489 CKSGFKGKEC 498
>Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical
protein ZK287.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -1
Query: 647 CDQSCRRIGFPGGVCVNG---RCKCDI-IATQFLGKFIRNLKCNTVECNEICHRLNYAGG 480
CD+ C + G C+N +C C++ A ++ +C+ + E C +L
Sbjct: 36 CDEHCESTRYRGD-CLNQAICKCSCEVDPAKPAKNACAKSERCDCLRIKEGCSKLCACKQ 94
Query: 479 ICKGNE 462
ICK E
Sbjct: 95 ICKNKE 100
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -1
Query: 611 GVCVNGRCKCDIIAT---QFLGKFIRNLKCNTVECNEICHRLNYAGGICKGNECSC 453
GVC GRC+C+ A Q G+F +C+ C ++ G C +C C
Sbjct: 539 GVCNCGRCECNPRANPEEQISGEF---CECDNFNCPRHDRKICAEHGECNCGKCIC 591
>U64601-8|AAB04576.2| 413|Caenorhabditis elegans Hypothetical
protein M03F4.6 protein.
Length = 413
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -1
Query: 740 NXRCQCDIIANHNIADLDEDRSSLNDCNIRGCDQSCRRIGFPGGVCVNGRCKC 582
N RC C N D+DE R+++ SC+R P +C +G+C+C
Sbjct: 50 NSRCTCP--TNFEEYDIDE-RTTICRLAPAKIGDSCQRDCKPPLLCRDGKCEC 99
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -1
Query: 611 GVCVNGRCKCDIIAT---QFLGKFIRNLKCNTVECNEICHRLNYAGGICKGNECSC 453
GVC GRC+C+ A Q G+F +C+ C ++ G C +C C
Sbjct: 539 GVCNCGRCECNPRANPEEQISGEF---CECDNFNCPRHDRKICAEHGECNCGKCIC 591
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 614 GGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAGGIC-KGNEC 459
G CV GRC C Q GK + + V E+C +G C KG+ C
Sbjct: 361 GSTCVMGRCTCVSPLVQHEGKCVLRQQQKIVGPGELCD----SGETCGKGSIC 409
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,748,114
Number of Sequences: 27780
Number of extensions: 401415
Number of successful extensions: 1116
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -