Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f02r
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           27   0.16 
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   0.64 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   2.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.6  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.9  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 530 NTVECNEICHRLNYAGGICKGNECSC 453
           N   C   CH L  AGG C+   C C
Sbjct: 31  NDSACAANCHSLGKAGGHCEKGVCIC 56



 Score = 26.2 bits (55), Expect = 0.37
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 659 NIRGCDQSCRRIGFPGGVCVNGRCKC 582
           N   C  +C  +G  GG C  G C C
Sbjct: 31  NDSACAANCHSLGKAGGHCEKGVCIC 56


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 659 NIRGCDQSCRRIGFPGGVCVNGRCKC 582
           N   C  +C  +G  GG C  G C C
Sbjct: 56  NDSACAANCLSLGKAGGHCEKGVCIC 81



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 530 NTVECNEICHRLNYAGGICKGNECSC 453
           N   C   C  L  AGG C+   C C
Sbjct: 56  NDSACAANCLSLGKAGGHCEKGVCIC 81


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 RNCVAIISHLHRPLTHTPP 615
           RN  A +SH  R + H PP
Sbjct: 688 RNLAAEVSHTQRLVVHVPP 706


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 621 SNSATRLIATSDI-TIIERRSIFIKISYIVVGYNVALASSVDAPPPEIQFCDTTDRILGY 797
           S  A  L+ +  + T++   S+ I ISY ++ +N+   SS +     I  C +   I+G 
Sbjct: 3   STEANELVMSVIVGTVVIVSSLIILISYALILFNILHMSSAEGWFKAIGTCGSHIIIVGL 62

Query: 798 Y 800
           +
Sbjct: 63  F 63


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
 Frame = -1

Query: 533 CNTVEC----NEICHR-LNYAGGICKGNECSC 453
           C  V+C    +E+C    NY G   +G +CSC
Sbjct: 56  CGIVQCAKGPDELCGGPQNYLGICAEGMQCSC 87


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 659 NIRGCDQSCRRIGFPGGVCVNGRCKC 582
           N   C  +C  +G  GG C    C C
Sbjct: 56  NDSACAANCLSLGKAGGHCEKVGCIC 81



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 530 NTVECNEICHRLNYAGGICKGNECSC 453
           N   C   C  L  AGG C+   C C
Sbjct: 56  NDSACAANCLSLGKAGGHCEKVGCIC 81


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 539 LKCNTVECNEICHRLNYA 486
           LK NTV C E  H L  A
Sbjct: 383 LKENTVTCQEAMHMLKNA 400


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 636 VSQNWISWRCVCQRTMQMRYYCNAISGKIYKKFKMQHRGV*RN 508
           +S  WI+     ++ + M   CN    +IY    M H    RN
Sbjct: 83  ISYKWITRSGTREQFIDMVARCNKAGVRIYVDVIMNHMSGDRN 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,248
Number of Sequences: 438
Number of extensions: 5104
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)