Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f02r
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             36   0.032
At2g20070.1 68415.m02345 hypothetical protein weak similarity to...    35   0.075
At2g15535.1 68415.m01779 SLR1 binding pollen coat protein-relate...    31   1.2  
At2g02130.1 68415.m00149 plant defensin-fusion protein, putative...    31   1.2  
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   2.8  
At2g02140.1 68415.m00150 plant defensin-fusion protein, putative...    29   3.7  
At1g73270.1 68414.m08479 serine carboxypeptidase S10 family prot...    28   8.6  
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet...    28   8.6  
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet...    28   8.6  
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet...    28   8.6  
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet...    28   8.6  
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet...    28   8.6  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
 Frame = -1

Query: 668 NDCNIRG-C-DQSCR-RIGFPGGVCVNGRC--------KCDIIATQFLGKFIRNLKCNTV 522
           N CN  G C D  CR  +G+ G  C N  C        KC              + C+T 
Sbjct: 605 NSCNFNGDCVDGKCRCLLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICENGFTGIDCSTA 664

Query: 521 ECNEICHRLNYAGGICKGN----ECSCY*VNIALQNASELL-ELKVCK 393
            C+E C   +  GG+C        CS Y      QN+S+L+  L VCK
Sbjct: 665 ICDEQC---SLHGGVCDNGVCEFRCSDY-AGYTCQNSSKLVTSLLVCK 708


>At2g20070.1 68415.m02345 hypothetical protein weak similarity to
           SP|O61705 Neurotoxin BmK-X precursor (BmK10)
           (Alpha-neurotoxin TX9) {Mesobuthus martensii}
          Length = 89

 Score = 34.7 bits (76), Expect = 0.075
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 521 ECNEICHRLNY-AGGICK-GNECSC 453
           +CN +CH L + AGG CK GN C C
Sbjct: 51  DCNGLCHELGFPAGGYCKPGNTCCC 75


>At2g15535.1 68415.m01779 SLR1 binding pollen coat protein-related
           contains weak similarity to SLR1 binding pollen coat
           protein [Brassica juncea] gi|7649936|dbj|BAA94096
          Length = 81

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -1

Query: 611 GVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAGGIC---KGNECSC 453
           G  VNG+C       Q +G    N KC   +C  +CH+    G IC   K N C C
Sbjct: 23  GAMVNGQCSFP----QPVGP---NGKCVPKDCKSLCHKKYKGGSICTTGKPNICMC 71


>At2g02130.1 68415.m00149 plant defensin-fusion protein, putative
           (PDF2.3) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be)
          Length = 77

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 614 GGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAGGICKGNECSCY 450
           G V V  R  C+  + +F G  +     +T  C  +CH   + GG C+G    CY
Sbjct: 24  GPVTVEART-CESKSHRFKGPCV-----STHNCANVCHNEGFGGGKCRGFRRRCY 72


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 614 GGVCVNGRCKCDIIATQFLGKFIRNLKCNTVECNEICHRLNYAGGICKGNECSCY 450
           G V V  R  C   + +F GK + +  C  V     CH   + GG C+G    C+
Sbjct: 24  GPVTVEART-CASQSQRFKGKCVSDTNCENV-----CHNEGFPGGDCRGFRRRCF 72



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 647 CDQSCRRIGFPGGVCVNGRCKC 582
           C+  C   GFPGG C   R +C
Sbjct: 50  CENVCHNEGFPGGDCRGFRRRC 71


>At2g02140.1 68415.m00150 plant defensin-fusion protein, putative
           (PDF2.6) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); similar to protease
           inhibitor II [Brassica rapa] gi|1209258|gb|AAA91049
          Length = 73

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 659 NIRGCDQSCRRIGFPGGVCVNGRCKC 582
           N + C ++C   GF GG C + RC C
Sbjct: 44  NSQSCAKACPSEGFSGGRCSSLRCYC 69


>At1g73270.1 68414.m08479 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare], glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase;
          Length = 441

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 291 HMDTY*DKCIKHNYNLNCLINKTFKERILIKLCE 190
           H+D Y  +C+K     N   +K ++  IL  LCE
Sbjct: 258 HVDPYNTECLKLLEEFNECTSKLYRSHILYPLCE 291


>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
           deacetylase family protein contains Pfam domain PF03331:
           UDP-3-O-acyl N-acetylglycosamine deacetylase
          Length = 955

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 688 MKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 575
           M + +  + ++++V ISRV   D L +CV+ D++  ++
Sbjct: 622 MDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVV 659


>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain;
          Length = 925

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 688 MKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 575
           M + +  + ++++V ISRV   D L +CV+ D++  ++
Sbjct: 592 MDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVV 629


>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
           deacetylase family protein contains Pfam domain PF03331:
           UDP-3-O-acyl N-acetylglycosamine deacetylase
          Length = 949

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 688 MKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 575
           M + +  + ++++V ISRV   D L +CV+ D++  ++
Sbjct: 616 MDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVV 653


>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
           gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
           gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
           dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
          Length = 905

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 688 MKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 575
           M + +  + ++++V ISRV   D L +CV+ D++  ++
Sbjct: 572 MDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVV 609


>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
           gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
           gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
           dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
          Length = 925

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 688 MKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 575
           M + +  + ++++V ISRV   D L +CV+ D++  ++
Sbjct: 592 MDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVV 629


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,540
Number of Sequences: 28952
Number of extensions: 345275
Number of successful extensions: 859
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)