Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f02f
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.7  
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.7  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   4.7  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   6.1  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   6.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.1  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/87 (25%), Positives = 35/87 (40%)
 Frame = -2

Query: 286  WLSVFVREPRVLRKLSQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKM 107
            W  V +R   V  KLSQ H   SH    N   RQS   A    +++      +F+    +
Sbjct: 1979 WFHVQLRN--VTSKLSQKHFEESHERFAN--IRQSLKNAKILVVKSFTTSRSIFRSLFSL 2034

Query: 106  LMFITDACIVHKTLTKHSIDSIVTSYP 26
               + D   ++  + +  IDS+    P
Sbjct: 2035 A--VVDTTTIYSDIEQQLIDSLDKRQP 2059


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 568 EDRSPSRSAILLLAIMSHLHRPLTHTPPG 482
           +D S  + +ILL+   + L +P+T TP G
Sbjct: 67  DDWSEQQESILLMCYENELQKPITCTPMG 95


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 243 NFLKTRGSRTKTDNQLPQLDCTTSECDQLCR 335
           N LK +G +   DNQ+P L         +C+
Sbjct: 442 NLLKNKGKKKSQDNQIPHLVGFLGHLSTICK 472


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +1

Query: 229 NAFAIISSKHVVHAQKLTTNYLNWIVLRQSVINCVADSDFLAVSVLVDNANVEIYT 396
           + F  +S  HV H    T  +  W+ L    I CV     + + +    A V +YT
Sbjct: 205 STFFCLSRYHVYHKAPFTFYWFKWLFLTGVCIGCVCSVKLVGLFI---TAVVGLYT 257


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = +2

Query: 335 QIRIFWRYLY--WWTMR 379
           +IR +WRYL+  WW ++
Sbjct: 73  KIRFWWRYLFYGWWNLK 89


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 480 FPGGVCVNGRCKC 518
           FP GVC NGR  C
Sbjct: 214 FPEGVCTNGRALC 226


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 229 CSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMF---ITDACIVHKTLTK 59
           CSP +  L   +++ S   A + Q +    + F F P+L+ L     +T+A  V +  TK
Sbjct: 334 CSPENPSLLVNTAKTSKMSARREQFQTNQNLPFCFTPNLEKLTIPYSVTEAANVFQNKTK 393

Query: 58  HSI 50
            ++
Sbjct: 394 RTL 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,226
Number of Sequences: 5004
Number of extensions: 64736
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)