Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f02f
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0028 + 27782072-27782171,27782427-27782620                       35   0.056
11_08_0013 + 27629086-27629185,27629441-27629634                       35   0.056
08_02_1156 - 24760332-24761530,24762757-24763648                       32   0.39 
05_03_0244 + 10857139-10857516                                         31   0.91 
11_01_0545 + 4308167-4308496                                           30   1.6  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     30   2.1  
02_05_0930 - 32801737-32801936,32802038-32802107                       30   2.1  
03_02_0141 + 5867591-5867736,5867926-5868010,5868096-5868137,586...    29   2.8  
01_01_0559 - 4109690-4111003                                           28   6.4  
11_01_0544 + 4306436-4306762                                           28   8.5  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    28   8.5  

>11_08_0028 + 27782072-27782171,27782427-27782620
          Length = 97

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 429 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIANNN 539
           L NCDM +C   C+  GF GG+C    N  C C   A  N
Sbjct: 45  LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84



 Score = 34.3 bits (75), Expect = 0.097
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGE 227
           ++  F S++     +  + +    G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 11  AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70

Query: 228 ---QCVCDNFLKT 257
               C C +  +T
Sbjct: 71  SNDHCCCTDEART 83


>11_08_0013 + 27629086-27629185,27629441-27629634
          Length = 97

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 429 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIANNN 539
           L NCDM +C   C+  GF GG+C    N  C C   A  N
Sbjct: 45  LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84



 Score = 34.3 bits (75), Expect = 0.097
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGE 227
           ++  F S++     +  + +    G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 11  AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70

Query: 228 ---QCVCDNFLKT 257
               C C +  +T
Sbjct: 71  SNDHCCCTDEART 83


>08_02_1156 - 24760332-24761530,24762757-24763648
          Length = 696

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 195 LGFPSGACDGEQCVCDNFLKTRGSRTKTDNQ 287
           LG  S  CDG+Q VCD +L TRG   ++  Q
Sbjct: 652 LGTTSNRCDGDQIVCD-YLSTRGITDESTRQ 681


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 564 SSLKDCNSRGCDQSCRRIGFPGGVCVNGRC 653
           SS   C+ +     C  +G PG  C  GRC
Sbjct: 39  SSFYSCSKKSAAAVCLAVGSPGATCCGGRC 68



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/77 (27%), Positives = 31/77 (40%)
 Frame = +3

Query: 423 STLENCDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQ 602
           S+  +C  +     C  +G PG  C  GRC            +D   S  + C   GC++
Sbjct: 39  SSFYSCSKKSAAAVCLAVGSPGATCCGGRC------------VDTGASG-EHCG--GCNK 83

Query: 603 SCRRIGFPGGVCVNGRC 653
           +C+     G  C  GRC
Sbjct: 84  ACKH----GRSCCGGRC 96


>11_01_0545 + 4308167-4308496
          Length = 109

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 126 NTNKTSIKLRNCDFTACDQLCRELGF-PSGAC 218
           +T  T I +  CD T C   CR+LG+ P  AC
Sbjct: 56  DTYATCIPVAACDDTGCAIRCRDLGYNPGSAC 87


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 120 GLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGSRTKTDNQLPQL 299
           GL ++ +SI  R C   +CDQ   +LG        +   CD+F   +   T+    L  L
Sbjct: 28  GLTSDSSSI--RRCRHVSCDQATIDLGIALIKASIDGPACDSF---KCGTTEERGILVCL 82

Query: 300 DCTTSEC 320
           DC +S C
Sbjct: 83  DCGSSLC 89


>02_05_0930 - 32801737-32801936,32802038-32802107
          Length = 89

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 438 CDMRECDQSCRRIGFPGGV--CVNGRCKCD 521
           CD   C  +C+R  + GG+  CV  +CKCD
Sbjct: 44  CDSGLCVANCQR-QYRGGIGQCVGNKCKCD 72


>03_02_0141 +
           5867591-5867736,5867926-5868010,5868096-5868137,
           5868255-5868423,5868792-5868844,5869022-5869240,
           5869507-5869553,5869732-5869786
          Length = 271

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 232 HCSPSHAPLGNPSSRQSWSQAVKSQLRN 149
           H +PS +P  +P+S + W  A +  LRN
Sbjct: 11  HAAPSSSPSPSPASLRQWRPAAQRNLRN 38


>01_01_0559 - 4109690-4111003
          Length = 437

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -2

Query: 253 LRKLSQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMFITDACI-V 77
           + +L Q    P+      P  R SW     +Q+  LIE L VFKP+L   +   D  +  
Sbjct: 7   VERLGQRRVVPAEPTPAGPL-RLSWLDRYPTQMA-LIESLHVFKPALDRAIGGDDVAVGP 64

Query: 76  HKTLTKHSIDSIVTSYPV 23
            +T+ +    ++V  YP+
Sbjct: 65  ARTIERALARALVHYYPL 82


>11_01_0544 + 4306436-4306762
          Length = 108

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 126 NTNKTSIKLRNCDFTACDQLCRELGF-PSG-AC 218
           NT  T  ++  CD T C   CR++G  P+G AC
Sbjct: 55  NTYSTCFEVSACDDTGCAIRCRDMGHNPAGSAC 87


>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
            31636653-31637541,31639401-31641266
          Length = 1599

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 292  GSWLSVFVREPRVLRKLSQTHC 227
            G WLS+ ++   VL+KLS T C
Sbjct: 1148 GKWLSLMLQHAEVLQKLSITSC 1169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,646
Number of Sequences: 37544
Number of extensions: 419756
Number of successful extensions: 1184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)