Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f02f
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 40 0.003
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 31 0.93
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 31 0.93
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.6
SB_49657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 6.5
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 28 6.5
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 438 CDMRECDQSCRRIGFPGGVCVNGRCKCDIIANN-NIADLDGDRSSLKDCNSRGCDQSC-R 611
C+ +C Q C R C G+CK + +A R L+ CN GC +C R
Sbjct: 87 CNAAKCTQMCARSRC-NMECNAGKCKQTCEGGSCTMACPPNARKCLQTCNGGGCHMTCPR 145
Query: 612 RIGFPGGVCVNGRC 653
+G+ C +GRC
Sbjct: 146 GVGYCHQTCAHGRC 159
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 492 VCVNGRC--KCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRCNA 659
VC+ G C +C+ D G + CNSR C QSC GG C RCNA
Sbjct: 239 VCIGGSCLFRCNSKGGRCWQDCTGGKCLNMFCNSRMCIQSC-----GGGGC-KMRCNA 290
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Frame = +3
Query: 423 STLENCDMRECDQSCRRIGFPGG---VCVNGRCKCDIIANNNIADLDGDRSSLK-DCNSR 590
S + C +C +C+ G G C G+C+ N + L C ++
Sbjct: 360 SCKQECKTAKCALTCKGKGTYGSCDQTCERGKCQLRCNTRENCKQTCKEGKCLTMSCKAK 419
Query: 591 GCDQSCRRIGFPGGVC 638
CDQ C PG C
Sbjct: 420 NCDQEC-----PGNQC 430
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = +3
Query: 405 DLNENQSTLENCDMRECDQSCRRIGFPGGVCV------NGRCKCDIIANNNIADLDGDRS 566
DLN ++ + D R+ + +++ GG C+ GRC D + R
Sbjct: 216 DLNFSKRDDKRDDKRDDKRDGKQVCI-GGSCLFRCNSKGGRCWQDCTGGKCLNMFCNSRM 274
Query: 567 SLKDCNSRGCDQSCRRIGFPGGVCVNGRCN 656
++ C GC C + +CV G C+
Sbjct: 275 CIQSCGGGGCKMRCNALKC-HQICVGGGCS 303
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 34.7 bits (76), Expect = 0.075
Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Frame = +3
Query: 267 RTKTDNQLPQLDCTTSECDQLCRRFGFSXXXXXXXXXXXXXXHK--NADLNENQSTLENC 440
+ K P+L C S C+Q C G + N + + N + C
Sbjct: 65 QNKDQKPCPRLKCAASTCNQRCLSGGCTDVACNSHTCLQTCTSNCTNMECHSNTKCTQEC 124
Query: 441 DMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDC---NSRGCDQSCR 611
+ C + G +C CK A+ + D R DC N+ C Q C+
Sbjct: 125 EDGACGLATSGSGKAEQICRGVGCKRMQCASAESCNQDCTRGCQLDCSNENTADCTQECK 184
Score = 34.3 bits (75), Expect = 0.100
Identities = 37/162 (22%), Positives = 51/162 (31%), Gaps = 1/162 (0%)
Frame = +3
Query: 156 NCDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGSRTKTDNQLPQLDCTTS-ECDQLC 332
NC C+ C P+ C G C K Q+ C+ S +CDQ C
Sbjct: 191 NCAAQTCESSCAHGSCPNMTCGGTNCT-----------QKCGKDCQQVVCSASGKCDQSC 239
Query: 333 RRFGFSXXXXXXXXXXXXXXHKNADLNENQSTLENCDMRECDQSCRRIGFPGGVCVNGRC 512
G + K + + + +C R C +C G NG
Sbjct: 240 DGEGCNLYCSEGA--------KTCNQKCQGACVTDCKSRWCGVTCTGSGCDVKCPNNGTE 291
Query: 513 KCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVC 638
CD + D R K C S+ D C+ I G C
Sbjct: 292 SCDQTCQKSAGDCK-MRCDAKVCTSKCTDGRCQAISCGGDRC 332
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 14/164 (8%)
Frame = +3
Query: 159 CDFTACDQLCRELGFPSGACDGEQCV------CDNF---LKTRGSRTKTDNQLPQLDCTT 311
C + C+Q C G AC+ C+ C N T+ ++ D +
Sbjct: 77 CAASTCNQRCLSGGCTDVACNSHTCLQTCTSNCTNMECHSNTKCTQECEDGACGLATSGS 136
Query: 312 SECDQLCRRFGFSXXXXXXXXXXXXXXHKNADL---NENQS-TLENCDMRECDQSCRRIG 479
+ +Q+CR G + L NEN + + C C +C
Sbjct: 137 GKAEQICRGVGCKRMQCASAESCNQDCTRGCQLDCSNENTADCTQECKTGSCSFNCAAQT 196
Query: 480 FPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRG-CDQSC 608
C +G C N G C++ G CDQSC
Sbjct: 197 CESS-CAHGSCPNMTCGGTNCTQKCGKDCQQVVCSASGKCDQSC 239
Score = 32.3 bits (70), Expect = 0.40
Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 1/157 (0%)
Frame = +3
Query: 174 CDQL-CRELGFPSGACDGEQCVCDNFLKTRGSRTKTDNQLPQLDCTTSECDQLCRRFGFS 350
C Q+ C G +CDGE C N + G+ KT NQ Q C T + C G +
Sbjct: 224 CQQVVCSASGKCDQSCDGEGC---NLYCSEGA--KTCNQKCQGACVTDCKSRWC---GVT 275
Query: 351 XXXXXXXXXXXXXXHKNADLNENQSTLENCDMRECDQSCRRIGFPGGVCVNGRCKCDIIA 530
++ D Q + +C MR CD C +GRC+
Sbjct: 276 CTGSGCDVKCPNNGTESCD-QTCQKSAGDCKMR-CDAKVCT-----SKCTDGRCQAISCG 328
Query: 531 NNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVCV 641
+ G K+C S C + PGG C+
Sbjct: 329 GDRCTQECG-----KNCTSMACTAKSCELSCPGGGCI 360
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +3
Query: 486 GGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRCNAT 662
GG C+NG+C C + N C R CD C+ G C NG C T
Sbjct: 281 GGSCINGKCVCAVGFTGN------------TCEERLCDPPCQN----SGTCNNGTCICT 323
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +3
Query: 438 CDMRECDQSCRRIGFPGGVCVNGRCKCDIIA--NNNIADLDGDRS-SLKDCNSRG-CDQS 605
CD + C G CVNG C CD +A ++ ++ G KDC+ G CD +
Sbjct: 1382 CDACFTGRGCNVECSGHGQCVNGACACDTLAGWRGSLCEVPGCAGVDGKDCSGHGTCDSA 1441
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +3
Query: 438 CDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRI 617
CD C+ G CV G+CKC+ A + G L C R D +C
Sbjct: 1511 CDPCYTGSGCQSECSGHGECVEGKCKCNEAAGDAYV---GVNCELPGCPGR--DGNCNGN 1565
Query: 618 GF 623
GF
Sbjct: 1566 GF 1567
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 31.1 bits (67), Expect = 0.93
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = -3
Query: 456 HIL--AYHNFRG*IDFHLGPHFCVYFHIRIVHQYRYRQKIRICDTIDHTL--T*YNPVEV 289
H+L A + R + +H+ + + + +R +++RYR + R+C T+ T+ T Y+ V V
Sbjct: 139 HVLYRARYRERYRVRYHVRVRYRLRYRVR--YRFRYRLRYRVCATLCDTMCVTVYDSVCV 196
Query: 288 VGCQFLCVNHVF*GNYRK 235
+ +N VF G K
Sbjct: 197 SSSVTIVMNEVFPGAISK 214
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 31.1 bits (67), Expect = 0.93
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 453 CDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRR--IGFP 626
C ++C +G+ G C +C+C + + G L + CDQ+C GF
Sbjct: 571 CLEACS-VGYFGRQC-QSKCQC---LHGYCDHVTGSCECLPGWTGKRCDQACPSGTYGFN 625
Query: 627 GGV---CVNGRCNAT 662
+ CVNG CNAT
Sbjct: 626 CTLPCACVNGSCNAT 640
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 441 DMRECDQSCRRIGFPGGVCVNGRCKCDIIANN---NIADLDGDRSSLKDCNSRGCD-QSC 608
D+++ D CR +G+PG + G I A + + + G+ S L C G ++C
Sbjct: 150 DIKDADVVCRELGYPGALSAQGGATWGIGAGSIWLDNLECTGNESRLVYCPHNGLGIENC 209
Query: 609 RRIGFPGGVC 638
+ G VC
Sbjct: 210 QHSEDAGVVC 219
>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 651
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 429 LENCDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIA-DLDGDRSSLKDCNSRGCDQS 605
++ C + CD +CR G + R ++++N D+D + LK S C Q
Sbjct: 145 IDECSSKPCDHTCRNTN--GSFVCSCREGFRLLSDNTTCRDID-ECEELKK-TSLSCGQR 200
Query: 606 CRRIGFPGGVCVNGRCNA 659
C + FPGG N CN+
Sbjct: 201 C--LNFPGG--YNCTCNS 214
>SB_49657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = +3
Query: 489 GVCVNGRCKCDIIANNNIADLDGDRSSLK-DCNSRGCDQSCRRIGFP------GGVCVNG 647
G+C+ GRC+ D D R SL RG ++ +G P GVC+ G
Sbjct: 111 GLCMAGRCRKDTDGQEKKTDGKFTRESLALVMPRRGQAKTAPNLGLPVVREPPRGVCMAG 170
Query: 648 RCNATL*P 671
RC + P
Sbjct: 171 RCRKEVIP 178
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 483 PGGVCVNGRCKCDIIANNNIADLDGDRSSLKD 578
P GVC+ GRC+ ++I + + + GD + + D
Sbjct: 163 PRGVCMAGRCRKEVIPDLDFVNNRGDANRVDD 194
>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 438 CDMRECDQSCRRIGFPGGVCVNGRCKC 518
C EC C GGVCVN +C+C
Sbjct: 467 CKQAECVPECLN----GGVCVNRQCQC 489
>SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 604
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 33 EVTMLSILCFVSVLCTIHA 89
E TML LCF+S+ CT +A
Sbjct: 476 EGTMLIYLCFISLFCTFYA 494
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 492 VCVNGRCK---CDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRI 617
+CVNG CK CD+I N+ + + CN G ++CR +
Sbjct: 91 ICVNGECKSLGCDLILNSKAKE-----DKCRVCNGNG--ENCRTV 128
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 634 TPPGNPILRHD*SHPRLLQSLREDRSPSRSAI 539
TP + +L+ HP LQ+ +D+S SRS I
Sbjct: 2661 TPSDHGLLKSKDPHPDTLQTTSQDQSKSRSGI 2692
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,531,204
Number of Sequences: 59808
Number of extensions: 527204
Number of successful extensions: 1492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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