Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f02f
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 34 0.12
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 31 0.62
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 31 0.62
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 31 0.82
U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin... 31 0.82
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 31 1.1
Z82055-4|CAB04846.1| 330|Caenorhabditis elegans Hypothetical pr... 30 1.4
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 30 1.9
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 30 1.9
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 30 1.9
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 3.3
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 28 5.8
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 28 5.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 28 7.6
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.6
AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical... 28 7.6
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 28 7.6
AC006742-6|AAF60498.1| 778|Caenorhabditis elegans Hypothetical ... 28 7.6
AC006742-3|AAF60501.1| 778|Caenorhabditis elegans Hypothetical ... 28 7.6
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 417 NQSTLENCDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRG 593
++ST N + CD+S R +G+P C C + AN + DLD ++S + CN G
Sbjct: 223 DRSTYMNVNFTGCDKSAR-VGWPA--CSTSECNKEEYAN--LIDLDDGKTSGQTCNVHG 276
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 558 DRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRCN 656
DRS+ + N GCD+S R+G+P C CN
Sbjct: 223 DRSTYMNVNFTGCDKSA-RVGWP--ACSTSECN 252
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 489 GVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRC 653
GVC GRC+C+ AN + G+ +C++ C + R+I G C G+C
Sbjct: 539 GVCNCGRCECNPRANPE-EQISGE---FCECDNFNCPRHDRKICAEHGECNCGKC 589
Score = 27.9 bits (59), Expect = 7.6
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 3/152 (1%)
Frame = +3
Query: 207 SGACDGEQCVCDNFLKTRGSRTKTDNQLPQLDCTTSECDQLCRRFGFSXXXXXXXXXXXX 386
S C+G VC + +G + + +T+ ++ C+R S
Sbjct: 486 SADCNGGDMVC-GVCRCKGGNVGKYCECNRPGMSTAALNEKCKRTNESAICEGRGVCNCG 544
Query: 387 XXHKNADLN-ENQSTLE--NCDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDG 557
N N E Q + E CD C + R+I G C G+C C +
Sbjct: 545 RCECNPRANPEEQISGEFCECDNFNCPRHDRKICAEHGECNCGKCICAPGWTGRACECPI 604
Query: 558 DRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRC 653
S N + C+ G C+ GRC
Sbjct: 605 STDSCLSANGKICNGK--------GECICGRC 628
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 489 GVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRC 653
GVC GRC+C+ AN + G+ +C++ C + R+I G C G+C
Sbjct: 539 GVCNCGRCECNPRANPE-EQISGE---FCECDNFNCPRHDRKICAEHGECNCGKC 589
Score = 27.9 bits (59), Expect = 7.6
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 3/152 (1%)
Frame = +3
Query: 207 SGACDGEQCVCDNFLKTRGSRTKTDNQLPQLDCTTSECDQLCRRFGFSXXXXXXXXXXXX 386
S C+G VC + +G + + +T+ ++ C+R S
Sbjct: 486 SADCNGGDMVC-GVCRCKGGNVGKYCECNRPGMSTAALNEKCKRTNESAICEGRGVCNCG 544
Query: 387 XXHKNADLN-ENQSTLE--NCDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDG 557
N N E Q + E CD C + R+I G C G+C C +
Sbjct: 545 RCECNPRANPEEQISGEFCECDNFNCPRHDRKICAEHGECNCGKCICAPGWTGRACECPI 604
Query: 558 DRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRC 653
S N + C+ G C+ GRC
Sbjct: 605 STDSCLSANGKICNGK--------GECICGRC 628
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 471 RIGFPGGVCVNGR-CKCDIIANNNIADLDGDRSSLKDCNSRGC 596
R+ FPGG CVNG+ C D N I + +L+ N+ C
Sbjct: 794 RVAFPGGECVNGQECLLDSHCNGTICVCNDGLYTLEIGNTFNC 836
>U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
b protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 471 RIGFPGGVCVNGR-CKCDIIANNNIADLDGDRSSLKDCNSRGC 596
R+ FPGG CVNG+ C D N I + +L+ N+ C
Sbjct: 220 RVAFPGGECVNGQECLLDSHCNGTICVCNDGLYTLEIGNTFNC 262
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -1
Query: 254 FEEIIANALFTIARATWKPKFTAELVTSRKVTVTQFN*SLICIQAFIKDVNV 99
FE+ + N++ TI +W+P F +L + R ++ F + I +F+ +NV
Sbjct: 267 FEKTVLNSMETIKMFSWEPHFWKKLKSMRGKELSVFR-KTLSINSFMHSLNV 317
>Z82055-4|CAB04846.1| 330|Caenorhabditis elegans Hypothetical
protein T26H2.4 protein.
Length = 330
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 388 IYTKMRT*MKINLPSKIVICENVIN 462
I T MRT +KINL ++V CE V+N
Sbjct: 53 IVTVMRTMLKINLHFRVVTCELVLN 77
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Frame = +3
Query: 426 TLENCDMRECDQSCRRIG-FPGGVCV-----NGRCKCDIIAN-NNIADLDG----DRSSL 572
T CD C C G F GG+CV G+ +C++ N +AD +G D
Sbjct: 339 TGRTCDEAVCPVVCSGNGVFSGGICVCKSGFKGK-ECEMRHNWCEVADCNGRGRCDTDGR 397
Query: 573 KDCNSRGCDQSCRRIGFPG------GVCVNGRC 653
CN ++C P GVCVNG C
Sbjct: 398 CRCNPGWTGEACELRACPHASCHDRGVCVNGTC 430
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 426 TLENCDMRECDQ-SCRRIGFPGGVCVNGRCKC 518
T E C++R C SC GVCVNG C C
Sbjct: 405 TGEACELRACPHASCH----DRGVCVNGTCYC 432
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Frame = +3
Query: 426 TLENCDMRECDQSCRRIG-FPGGVCV-----NGRCKCDIIAN-NNIADLDG----DRSSL 572
T CD C C G F GG+CV G+ +C++ N +AD +G D
Sbjct: 281 TGRTCDEAVCPVVCSGNGVFSGGICVCKSGFKGK-ECEMRHNWCEVADCNGRGRCDTDGR 339
Query: 573 KDCNSRGCDQSCRRIGFPG------GVCVNGRC 653
CN ++C P GVCVNG C
Sbjct: 340 CRCNPGWTGEACELRACPHASCHDRGVCVNGTC 372
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 426 TLENCDMRECDQ-SCRRIGFPGGVCVNGRCKC 518
T E C++R C SC GVCVNG C C
Sbjct: 347 TGEACELRACPHASCH----DRGVCVNGTCYC 374
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Frame = +3
Query: 426 TLENCDMRECDQSCRRIG-FPGGVCV-----NGRCKCDIIAN-NNIADLDG----DRSSL 572
T CD C C G F GG+CV G+ +C++ N +AD +G D
Sbjct: 463 TGRTCDEAVCPVVCSGNGVFSGGICVCKSGFKGK-ECEMRHNWCEVADCNGRGRCDTDGR 521
Query: 573 KDCNSRGCDQSCRRIGFPG------GVCVNGRC 653
CN ++C P GVCVNG C
Sbjct: 522 CRCNPGWTGEACELRACPHASCHDRGVCVNGTC 554
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 426 TLENCDMRECDQ-SCRRIGFPGGVCVNGRCKC 518
T E C++R C SC GVCVNG C C
Sbjct: 529 TGEACELRACPHASCH----DRGVCVNGTCYC 556
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 29.1 bits (62), Expect = 3.3
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 7/172 (4%)
Frame = +3
Query: 153 RNCDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGSRTKTDNQLPQLDCTTSECDQLC 332
R C+ C + C +GE C F T + Q C T+ C+ +C
Sbjct: 1671 RQCEINECSETC---------WNGETCAVQEFGSTTNVVCHCPSNYTQSSCATNVCEGVC 1721
Query: 333 RRFGFSXXXXXXXXXXXXXXHKNADLNENQSTLENCDMRECDQSCRRIGFPGGVC----- 497
G + + ++ T +C + + C F GG C
Sbjct: 1722 GPRGSCKTVPCPKDEPHCRSYSFCECDKGW-TGPHCRHKADAKVCYGHCFSGGACDGEGP 1780
Query: 498 VNGRCKC-DIIANNNIADLDGDRSSLKDCNSRG-CDQSCRRIGFPGGVCVNG 647
+N RC C D + N + G +C + G C + P +C +G
Sbjct: 1781 LNLRCSCGDGLTGNRCQNCVG-----HECLNGGFCSYANSNRSLPHCICPSG 1827
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Frame = -2
Query: 346 NPNLRHN*SHSDVVQSS*GSWLSVFVREPRVLR--KLSQTHCSPSHAPLGNPSSRQSWSQ 173
+PNL+ +V GS+ SV V+ +LR +++Q + ++A L + + + +++
Sbjct: 136 DPNLKKQSQKKNVAAVVGGSYSSVSVQLANLLRLFRIAQVSPASTNADLSDKNRFEYFAR 195
Query: 172 AVKS---QLRNLIEVLFVFKPSLKMLMFITD 89
V S Q ++E+ FK S L++ D
Sbjct: 196 TVPSDDYQAMAMVEIAVKFKWSYVSLVYSAD 226
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Frame = -2
Query: 346 NPNLRHN*SHSDVVQSS*GSWLSVFVREPRVLR--KLSQTHCSPSHAPLGNPSSRQSWSQ 173
+PNL+ +V GS+ SV V+ +LR +++Q + ++A L + + + +++
Sbjct: 181 DPNLKKQSQKKNVAAVVGGSYSSVSVQLANLLRLFRIAQVSPASTNADLSDKNRFEYFAR 240
Query: 172 AVKS---QLRNLIEVLFVFKPSLKMLMFITD 89
V S Q ++E+ FK S L++ D
Sbjct: 241 TVPSDDYQAMAMVEIAVKFKWSYVSLVYSAD 271
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +3
Query: 438 CDMRECDQSCRRIG---FPGGVCVNGRCKC--DIIANNNIADLDGDRSSLKD--CNSRGC 596
CD+R C R G F GG C++G C C D N + +SSL + C S C
Sbjct: 453 CDLRLEIGICSRQGGKCFNGGKCLSGFCVCPPDFTGNQCEVNRKNGKSSLSENLCLSDPC 512
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +3
Query: 438 CDMRECDQSCRRIG---FPGGVCVNGRCKC--DIIANNNIADLDGDRSSLKD--CNSRGC 596
CD+R C R G F GG C++G C C D N + +SSL + C S C
Sbjct: 453 CDLRLEIGICSRQGGKCFNGGKCLSGFCVCPPDFTGNQCEVNRKNGKSSLSENLCLSDPC 512
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = +3
Query: 489 GVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGG 632
G CVNG CD D GD S C+ G SC G GG
Sbjct: 4059 GKCVNGTVACD------RKDDCGDASDEIGCSKHGGKTSCEAFGNNGG 4100
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 435 NCDMRECDQSCRRIGFP--GGVCVNGRCKC 518
NC+ + C S + P G CV+GRC+C
Sbjct: 230 NCEYQVCQLSGKSTESPCHEGQCVDGRCEC 259
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 435 NCDMRECDQSCRRIGFP--GGVCVNGRCKC 518
NC+ + C S + P G CV+GRC+C
Sbjct: 230 NCEYQVCQLSGKSTESPCHEGQCVDGRCEC 259
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = +3
Query: 489 GVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGG 632
G CVNG CD D GD S C+ G SC G GG
Sbjct: 4059 GKCVNGTVACD------RKDDCGDASDEIGCSKHGGKTSCEAFGNNGG 4100
>AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical
protein Y46G5A.10 protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 238 QTHCSPSHAPLGNPSSRQSWSQAVKSQLRN 149
+T CS H P NP +++ Q+ +S R+
Sbjct: 575 RTPCSDIHIPYNNPEKERAYQQSERSSYRS 604
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 435 NCDMRECDQSCRRIGFP--GGVCVNGRCKC 518
NC+ + C S + P G CV+GRC+C
Sbjct: 230 NCEYQVCQLSGKSTESPCHEGQCVDGRCEC 259
>AC006742-6|AAF60498.1| 778|Caenorhabditis elegans Hypothetical
protein Y38C1AB.2 protein.
Length = 778
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 139 VLFVFKPSLKMLMFITDACIVHKTLTKH-----SIDSIVTSYP 26
+ FVF ++ M+ +TD C H+ LTK I IV YP
Sbjct: 578 MFFVFLCAMFMITTVTDICCDHRWLTKRFTCVWKIIKIVEGYP 620
>AC006742-3|AAF60501.1| 778|Caenorhabditis elegans Hypothetical
protein Y38C1AB.6 protein.
Length = 778
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 139 VLFVFKPSLKMLMFITDACIVHKTLTKH-----SIDSIVTSYP 26
+ FVF ++ M+ +TD C H+ LTK I IV YP
Sbjct: 578 MFFVFLCAMFMITTVTDICCDHRWLTKRFTCVWKIIKIVEGYP 620
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,473
Number of Sequences: 27780
Number of extensions: 390697
Number of successful extensions: 1247
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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