Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f02f
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20465.1 68415.m02389 expressed protein 31 0.57
At3g24430.1 68416.m03066 expressed protein contains Pfam profile... 30 1.8
At2g20070.1 68415.m02345 hypothetical protein weak similarity to... 30 1.8
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative... 29 3.1
At2g02140.1 68415.m00150 plant defensin-fusion protein, putative... 29 4.0
At5g42620.1 68418.m05188 expressed protein 28 5.3
At3g63360.1 68416.m07131 defensin-related contains weak similari... 28 5.3
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi... 28 5.3
At5g45720.1 68418.m05621 hypothetical protein 27 9.3
At5g20380.1 68418.m02424 transporter-related low similarity to v... 27 9.3
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 27 9.3
At1g30320.1 68414.m03708 remorin family protein contains Pfam do... 27 9.3
>At2g20465.1 68415.m02389 expressed protein
Length = 89
Score = 31.5 bits (68), Expect = 0.57
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 171 ACDQLCRELGFPSGACDG--EQCVCDNFL 251
+CD C+ L F SG C G E+C C +++
Sbjct: 60 SCDLFCKRLKFESGLCTGDLEKCCCIDYI 88
>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
PF01883: Domain of unknown function
Length = 532
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 647 SVDAHTARKSNSATRLIASSAITIFERRSISIQISYIV--VGYNVAFASAIDAHAT 486
S + T R+SNS TRL+ S + ISI + I+ V N++ A A A A+
Sbjct: 13 SFEIQTQRRSNSTTRLLLSHKFLHSQASIISISRTRILKRVSQNLSVAKAASAQAS 68
>At2g20070.1 68415.m02345 hypothetical protein weak similarity to
SP|O61705 Neurotoxin BmK-X precursor (BmK10)
(Alpha-neurotoxin TX9) {Mesobuthus martensii}
Length = 89
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +3
Query: 174 CDQLCRELGFPSGA-C-DGEQCVC 239
C+ LC ELGFP+G C G C C
Sbjct: 52 CNGLCHELGFPAGGYCKPGNTCCC 75
>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
(PDF2.1) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); contains a
gamma-thionin family signature (PDOC00725)
Length = 77
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 168 TACDQLCRELGFPSGACDG--EQCVC 239
T C+ +C GFP G C G +C C
Sbjct: 48 TNCENVCHNEGFPGGDCRGFRRRCFC 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 453 CDQSCRRIGFPGGVCVNGRCKC 518
C+ C GFPGG C R +C
Sbjct: 50 CENVCHNEGFPGGDCRGFRRRC 71
>At2g02140.1 68415.m00150 plant defensin-fusion protein, putative
(PDF2.6) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); similar to protease
inhibitor II [Brassica rapa] gi|1209258|gb|AAA91049
Length = 73
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 582 NSRGCDQSCRRIGFPGGVCVNGRC 653
NS+ C ++C GF GG C + RC
Sbjct: 44 NSQSCAKACPSEGFSGGRCSSLRC 67
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 447 RECDQSCRRIGFPGGVCVNGRCKC 518
+ C ++C GF GG C + RC C
Sbjct: 46 QSCAKACPSEGFSGGRCSSLRCYC 69
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 414 ENQSTLENCDMRECDQSCRRIGFPGGVCVNGRCK 515
EN T +C CD+ C GGVC NG C+
Sbjct: 653 ENGFTGIDCSTAICDEQC---SLHGGVCDNGVCE 683
>At3g63360.1 68416.m07131 defensin-related contains weak similarity
to defensin [Capsicum annuum] gi|1200228|emb|CAA65045
Length = 85
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +3
Query: 174 CDQLCRELGFPSGAC--DGEQCVCDN 245
CD LC+ G SG C D +C+C N
Sbjct: 54 CDNLCKYEGAISGVCVSDPHRCLCRN 79
>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 768
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 498 VNGRCKCDIIANNNIADLDGDRSSLKD 578
+N CK D I NN+I + G SL+D
Sbjct: 94 LNSNCKYDTILNNHILSMYGKCGSLRD 120
>At5g45720.1 68418.m05621 hypothetical protein
Length = 900
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 531 NNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPG----GVCVNGRCNA 659
++ + ++ GD L CN R CRR F G G VN R NA
Sbjct: 157 SDQLNEVGGDSDDLVSCNVRPRGDGCRRRKFRGTRRAGRAVNVRDNA 203
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 47 IYTVFCECFVHYTCIS 94
IYT FC + HYTC+S
Sbjct: 323 IYTHFCGSWGHYTCLS 338
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 553 MEIDLLSKIVIAEDAISRVAELDFLAVCASTDDAMRHYSQH--NIADLDEXRSSL 711
M++D + K + D + L+ LA+C ST + + +SQ+ I L+ SS+
Sbjct: 605 MKLDKMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSM 659
>At1g30320.1 68414.m03708 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 509
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 367 PIQIPPENPNLRHN*SHSDVVQSS 296
P++I P+N HN S D+ QSS
Sbjct: 206 PVRIVPDNAGYEHNKSRMDLCQSS 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,811,404
Number of Sequences: 28952
Number of extensions: 338330
Number of successful extensions: 939
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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