Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e24r
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   7e-31
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                  105   4e-23
SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)            33   0.20 
SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)                30   1.9  
SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  130 bits (315), Expect = 7e-31
 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 10/184 (5%)
 Frame = -3

Query: 585 TDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILPDITVGNYI---PPEWPQSA 415
           T+E++++++G +D+F  NHY+  LV  ++  +   T   +   T GNY+    P W ++A
Sbjct: 318 TEEQKKMIKGTADYFATNHYSSDLVQHHDFYNGAKTPQEM--WTDGNYVLKGDPNWNRTA 375

Query: 414 SYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPT------NGLLDDDRIRYYRAA 253
             W  + P  +   L Y +  Y DP   ITENG S+P          L DD R+ ++   
Sbjct: 376 FNWAVV-PWGLRKFLKYFKDNYGDPEVIITENGCSAPGEYLKTVPERLEDDFRVDFFNRY 434

Query: 252 LESVLDCLDA-GIRLKGYMAWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVY 76
           +  V       G+++KGY AWSLMDNFEW +GY   FG++ V+F+DP RPR P+KSA  Y
Sbjct: 435 INEVYKAYKLDGVKVKGYYAWSLMDNFEWFQGYNMPFGIHFVNFTDPNRPRLPKKSAIFY 494

Query: 75  KEIL 64
           K+I+
Sbjct: 495 KKIV 498


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score =  105 bits (251), Expect = 4e-23
 Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
 Frame = -3

Query: 408 WLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLLDD------DRIRYYRAALE 247
           WL  +P  +   L +++  YN+P   ITENG+S      L  D       R+ Y +  L 
Sbjct: 205 WLYCTPFGLRKILNWIKGNYNNPEIIITENGFSCDGEEDLSGDAALEDTHRVNYLKGYLN 264

Query: 246 SVL-DCLDAGIRLKGYMAWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKE 70
             L   +  G++L GY  WSLMDNFEW +GY  RFG++ VDF DP + RTP+KSA V+KE
Sbjct: 265 QALKSVIKDGVQLTGYFLWSLMDNFEWDDGYKFRFGVHHVDFDDPHKHRTPKKSALVFKE 324

Query: 69  ILRSR 55
           I+ ++
Sbjct: 325 IVANK 329


>SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)
          Length = 147

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 642 IVAEKKCKRRLPVVQNSGITDEERELVRGASDFFGVNHYTGFL 514
           +VAEK  K+ +P    S  T EE+  ++G  DFF +N Y+  L
Sbjct: 73  VVAEKSKKQGIPCRLPS-FTAEEKTYIKGTIDFFALNFYSASL 114


>SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)
          Length = 182

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 632 KKSAKEGYPWSRIPELQTKNENWSEELRTSLGSTITPASWCLPTSKFLI 486
           KK  K    W+R+  L    +NW+  +RT + +T  P S C P  + ++
Sbjct: 70  KKRRKRWRRWNRVSPLSRIRDNWATIVRTVMFTT-RPNSSCSPLVRLVM 117


>SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 387 SIYDTLTYLQKRYNDPIF 334
           S++DT  YLQK++NDP F
Sbjct: 885 SVHDTF-YLQKKFNDPYF 901


>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -3

Query: 429 WPQSASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNG 292
           WP     WLT  P+     L  L  RY  P      +  S PP  G
Sbjct: 49  WPLLVERWLTHRPEREVGVLRDLCDRYIGPTLEYLASKTSVPPQTG 94


>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 399 LSPDSIYDTLTYLQKRYNDPIFYIT-ENGWSSPPTNGLLDDDRIRYYRAALESVLDCLDA 223
           + PD  Y   T + K + +P+  IT E G S     GLL    ++        VL+ +DA
Sbjct: 141 VDPDRRYRLFTVVGKAHAEPLAPITEEEGRSEHKIGGLL----VKRRDQIAVGVLEGIDA 196

Query: 222 GIRLKG 205
           GI  KG
Sbjct: 197 GIWEKG 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,222,267
Number of Sequences: 59808
Number of extensions: 489071
Number of successful extensions: 1397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)