Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e24f
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        203   8e-53
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             200   1e-51
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)                 42   4e-04
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)                     28   7.1  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  203 bits (496), Expect = 8e-53
 Identities = 86/169 (50%), Positives = 121/169 (71%)
 Frame = +3

Query: 81  RFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKDGSTGDIAANSYHNVER 260
           +FP+ F+ G ATA++QIEGAWNEDGKG NIWD  +H     + +    DIA +SYH  + 
Sbjct: 14  QFPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHKT-GNIHNNENADIACDSYHKTDE 72

Query: 261 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 440
           D+++++ LG+  YRFS+SW+RILP G  + +N++GV+YYNR+I+++L   I P+ TL+H+
Sbjct: 73  DIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHF 132

Query: 441 DLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVKHWITINEPREYA 587
           DLPQ LQ+ GG+ N     WF  YARV +  FGDRV+ W+TINEP E A
Sbjct: 133 DLPQALQDKGGWLNSRVIEWFAGYARVCFKLFGDRVRLWLTINEPHEEA 181


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  200 bits (487), Expect = 1e-51
 Identities = 87/165 (52%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
 Frame = +3

Query: 84  FPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAA-VKDGSTGDIAANSYHNVER 260
           FP DF  G+AT++YQIEGAW+ DGKG  +WDYLTH++  + +    TGD+A +SYH  + 
Sbjct: 36  FPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDSYHKYKE 95

Query: 261 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 440
           DV+++R LG+  YRFS+SW RILP G    IN  G++YYN LINE+L Y I P+ T++HW
Sbjct: 96  DVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATIYHW 155

Query: 441 DLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVKHWITINEP 575
           DLP   +  G + N      F DYA + + NFGDRVK WITINEP
Sbjct: 156 DLPVPFRMAGSWTNSSIIEHFNDYAEICFKNFGDRVKKWITINEP 200


>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
          Length = 398

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 41/76 (53%)
 Frame = +3

Query: 255 ERDVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLF 434
           E+D+E+M+ LGL+V R    W  + P+    + NE  ++   +++    KYGI  ++ + 
Sbjct: 199 EQDMELMQSLGLNVLRLGYMWPGVEPT--RGKYNETYIEVIKKIVTLSAKYGIYVLLDM- 255

Query: 435 HWDLPQKLQELGGFAN 482
           H D+  +   + GF N
Sbjct: 256 HQDVMSRKFCVEGFPN 271


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 420 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNF 536
           M   + WD  +KL+ L  +    AS+WF  + R  +  +
Sbjct: 189 MTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAAFNTW 227


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 369  DYYNRLINEMLKYG----ITPMITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNF 536
            +Y++ LIN+ ++      +   +   H+ L +K QEL    N + + +   +AR+   N 
Sbjct: 1026 EYFDLLINDCVEVNDVFIVNEELIQVHYKLGEKFQELKPHTNVVVAAFTTSFARLKLYNV 1085

Query: 537  GDRV 548
             DR+
Sbjct: 1086 MDRL 1089


>SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 551 FDSVTEIRVDHARVVFKPNGSQWIGEASQFLQLLRQVPVE*SNHRGYAVLQHLV 390
           F SV ++ VDH   +F+ NG  WI     F            +HRG+  +Q LV
Sbjct: 61  FISVQQVGVDHTEGLFQYNGLVWITPRVYF-----STTGWCGSHRGFISVQRLV 109


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 537  RNSCRPRARSLQTKWKPVDWRSLPVPAASEASP 439
            ++S  P+A  L  +  P DW + P PAAS+  P
Sbjct: 2818 KDSLTPQASPLPGQGPPADWMNSP-PAASKPGP 2849


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,140,911
Number of Sequences: 59808
Number of extensions: 332673
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)