Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e23r
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.42 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.42 
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   1.3  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   1.3  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   1.3  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   3.9  
At2g01050.1 68415.m00010 hypothetical protein                          28   5.2  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    28   6.9  
At3g29185.1 68416.m03658 expressed protein                             28   6.9  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    28   6.9  
At4g33600.1 68417.m04773 expressed protein                             27   9.1  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 435
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 435
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 576 LKGSGSW*EQYQRTVGTIDSRWV 644
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 576 LKGSGSW*EQYQRTVGTIDSRWV 644
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 576 LKGSGSW*EQYQRTVGTIDSRWV 644
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 PLYCSLQFSLLVTMSSSLWRLPSDTL 289
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = +1

Query: 205 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 369
           +MT++  P  FF+    FEL E    Y AAL G  P   +    L       +D L D+ 
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161

Query: 370 TLLDVWAEVDGMCYSYDAHILVVILLREFG 459
               VW  +  + Y+Y    L++ + R  G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 141 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 31
           N  +G  AF  NA   +  FG   +N IYP  +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 639 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 520
           +LN  F       L  + Y+ST TCF+G F     YD   RRI++
Sbjct: 2   MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46


>At3g29185.1 68416.m03658 expressed protein
          Length = 433

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 133 LGCPCLLSKCASRHRIFWKEQCQ*HLPRS 47
           +GCPC +SKC +  + F  E C    P S
Sbjct: 380 MGCPCDVSKCVADLKSFHLEFCWLESPSS 408


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +1

Query: 247 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 405
           HN F  L EV+   +A L       S + Q+N    G+   + D     D+W     DG 
Sbjct: 84  HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141

Query: 406 CYSYDAHILVVILLREF 456
           C+++ A    + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158


>At4g33600.1 68417.m04773 expressed protein 
          Length = 453

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 637 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 545
           L +MVP V W   HQ   P    L+ W  LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,137,061
Number of Sequences: 28952
Number of extensions: 393343
Number of successful extensions: 1008
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)