Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e22f
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 258 3e-69
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 3e-08
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 30 1.6
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 1.6
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 2.1
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 2.8
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 3.7
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 27 8.6
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 258 bits (631), Expect = 3e-69
Identities = 121/171 (70%), Positives = 138/171 (80%)
Frame = +1
Query: 82 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 261
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RII
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63
Query: 262 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 441
DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NK
Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123
Query: 442 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYIL 594
KRS RK AR+ AKV +EEQF TGRL ACV+SRPGQ GR DGYIL
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYIL 174
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +1
Query: 142 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 321
P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 322 AIVVVDATPFRQWYESH 372
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 58 RATGGKRAPIRKKRKYELGRPAANTRLGP 144
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 516 AIPHRAFAGLRGESPRSVWSRR 581
A PH A +G+R SPR +W R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 516 AIPHRAFAGLRGESPRSVWSRRWL 587
A PH A +G+R PRS+W R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 516 AIPHRAFAGLRGESPRSVWSRRWL 587
A PH A +G+R PRS+W R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 516 AIPHRAFAGLRGESPRSVWSRR 581
A PH A +G+R PRS+W R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 516 AIPHRAFAGLRGESPRSVWSRRWL 587
A PH A + +R PRS+W R L
Sbjct: 170 ACPHHAVSSVRVSPPRSIWCSRVL 193
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 397 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 534
+ AKL + EE II K+ + TA + ++ K++ ALE +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 241 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 354
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 1 VFFFDPTKMGISRDHWHKRRATG--GKRAPIRKKRKYELG 114
VF P+K S+ K+ ATG GK AP +KK+K+ G
Sbjct: 474 VFSDSPSKNKESKSTKRKKSATGGEGKEAPAKKKQKHNDG 513
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 442 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 588
++S+K K + +L +EG E H G LL S C R GY
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGY 181
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 371 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 231
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 16 PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 162
P +S D W K++ K+ I+KKR+ + A LG QR+ +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 439 KKRSQKTARKYLARQRLAKVEGALEE 516
K+R QK + Y RQR ++ +LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 350
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 119 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 244
P ++P L +TP VHVV + R V +TS+ +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,958
Number of Sequences: 59808
Number of extensions: 402955
Number of successful extensions: 1109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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