Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e21r
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04310.1 68414.m00422 ethylene receptor-related similar to et...    29   3.9  
At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont...    28   5.2  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   5.2  
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [...    28   6.9  
At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.9  
At2g45010.2 68415.m05605 expressed protein weak similarity to PG...    27   9.1  
At2g45010.1 68415.m05604 expressed protein weak similarity to PG...    27   9.1  

>At1g04310.1 68414.m00422 ethylene receptor-related similar to
           ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
           contains Pfam profiles PF01590: GAF domain, PF00512: His
           Kinase A (phosphoacceptor) domain
          Length = 645

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 406 PTWLWLMTATSLWRLFML*LPCIWTLEVVTLVP 504
           P W W+MTA +++++    +  +  L +VTL+P
Sbjct: 110 PHWPWVMTAVTVFKMLTGIVSFLTALSLVTLLP 142


>At4g13560.1 68417.m02113 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein similar to LEA protein [Cicer arietinum]
           GI:2909420; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 109

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 527 QKRG*TDEPGHPWTSSSEQRSQSGC 601
           Q RG   E    WT S++Q +QS C
Sbjct: 10  QNRGQAQEKAEQWTESAKQTAQSAC 34


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 572 WRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLH 441
           WR  +   +   LA+G +    GGTRV     H    + +N LH
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607


>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
           [Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
           thaliana] GI:6960305
          Length = 84

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 572 WRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLH 441
           WR  +   +   LA+G +    GGTRV     H    + +N LH
Sbjct: 29  WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEEWILNELH 72


>At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 452

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 586 VTERVLVSKEAPQIEVL--PFVSAITSPARW 672
           VTER  ++K APQIEVL  P V    S   W
Sbjct: 323 VTERGYIAKWAPQIEVLGHPAVGGFWSHCGW 353


>At2g45010.2 68415.m05605 expressed protein weak similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 198

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 275 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 391
           G++ G +  +  +K+     P       CC HW   C E
Sbjct: 102 GIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQE 140


>At2g45010.1 68415.m05604 expressed protein weak similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 244

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 275 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 391
           G++ G +  +  +K+     P       CC HW   C E
Sbjct: 148 GIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQE 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,008
Number of Sequences: 28952
Number of extensions: 229399
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)