Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e21f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.6  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.3  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   8.4  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 516  QPSQWKQQLCWYLGLGCRLRQNFRC 590
            QP QW Q+LC    L CR   ++ C
Sbjct: 1785 QPFQWFQELCVKAFLACRPYAHYIC 1809


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 358 TLAFGTANIFSGGTRVTTSSVHMHGSYNMNN 450
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 418 VHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLAS 528
           V  H   +MNNLH  +  ++H      N+   I+  S
Sbjct: 135 VGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTS 171


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
 Frame = +1

Query: 196 GSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWR--SRDAQARQFTLAF 369
           G AA   ++    G +  L      I   +LL NT  +T     R     + AR F L F
Sbjct: 352 GHAAVKCSYKANEGQLYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTF 411

Query: 370 ----GTANIFSGGTRVTTSSVHMHGSYNMNNLHNDVA 468
               GT+  FS   RV  S++          +HND+A
Sbjct: 412 TLRSGTSYQFSNINRVEQSALVAFLESKQIKIHNDLA 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,976
Number of Sequences: 5004
Number of extensions: 34379
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)