Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e21f
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 0.53
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 31 0.70
08_02_0593 + 19078264-19078609,19078724-19082256 30 1.6
04_03_0811 - 19909128-19912214 30 1.6
12_02_0304 + 17112677-17113195 29 2.8
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.7
02_02_0549 + 11410129-11412180 29 3.7
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 28 4.9
10_02_0061 - 4812903-4812940,4813140-4813536 28 6.5
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 6.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.5
01_07_0385 - 43212580-43213142,43213234-43213612 28 6.5
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929... 27 8.6
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 27 8.6
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 27 8.6
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 8.6
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 27 8.6
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 305 ERVLVSKEAPQIEVLPFVSAITSPARWG*APALAAEPPTILV 180
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 31.1 bits (67), Expect = 0.70
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 124 GIPRAESLKRAEEAADFDGTRIVGGSAANAGA-HPHLAGLVIALTNGRTSICGASLLTNT 300
G RA ++ AAD GT G+ NA A + A V+ + +GR S+ +L +
Sbjct: 20 GAERAGAVVAPPRAADAAGTGT--GTGRNAVAVNGGAAEDVVVIASGRRSVGEPTLDVSE 77
Query: 301 RSVTAAHCWRSRDAQ 345
+ AA WRSR Q
Sbjct: 78 MLLQAAETWRSRRTQ 92
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 124 GIPRAESLKRAEEAADF--DGTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTN 297
G R S R E+AA + +V G +A +GA A +GR S+ G +L +
Sbjct: 73 GTSRGGSGARREDAAGTGRNAVAVVAGGSATSGAERVAA----RAEDGRRSMDGPTLELS 128
Query: 298 TRSVTAAHCWRSRDAQ 345
+ AA WRSR Q
Sbjct: 129 EMMLHAAQPWRSRCTQ 144
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 301 GCWSVRKLRRLKFCHS*VRSQVQQDGGEHQRWRQ 200
GCWS+R+L L+ HS SQ + GE WR+
Sbjct: 962 GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992
>12_02_0304 + 17112677-17113195
Length = 172
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 341 PRLVSSPSLLAQLTSSPEAPGSPPPV 418
PR SPS+ A+ T +P SPPPV
Sbjct: 42 PRRAPSPSVTAEPTPAPVIAPSPPPV 67
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 274 CGASLLTNTRSVTAAHCWRSR 336
CG+ ++T TRSVT A C S+
Sbjct: 275 CGSRIITTTRSVTVASCCSSQ 295
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 361 LAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNNIQRINLASGSN 537
LA +F+G V ++S H+ + ++ + N D IN+NHVG N N +LAS N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ----DLASRDN 183
Query: 538 N 540
+
Sbjct: 184 D 184
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 341 PRLVSSPSLLAQLTSSPEAPGSPPP 415
PRLVSSP+ L + P+ P P P
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQP 73
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 62 WRWRPWSW---QKRLSNLTTTPRSVSPGPRVLSAPRKP 166
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 353 SSPSLLAQLTSSPEAPGSPPP 415
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 226 GGEHQRWRQNHPQSW 182
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 414 GGGDPGASGEDVSCAKSEGELTSLGIPGPP--AVSSGHR 304
GGGD GAS VS A + +G+ PP V +G R
Sbjct: 182 GGGDGGASSVVVSAAAAAARRLPVGVRKPPLHVVVTGER 220
>12_01_1113 -
11888691-11888900,11891794-11892243,11892274-11892950,
11893396-11893957,11894121-11894207
Length = 661
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 88 EEAIELDYHTKIGIPRAESLKRAEEAADFDGTRIVGGSAANAGAHP 225
+E + D IG PR +S K+ +E T G+A+ + AHP
Sbjct: 567 QELTQPDPRMGIGKPRGKSAKKLKELRLPAPTNSSNGNASTSSAHP 612
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 341 PRLVSSPSLLAQLTSSPEAPGSPPPVS 421
PRLVSSP +L SSP A PP+S
Sbjct: 24 PRLVSSP----RLASSPAACAEQPPIS 46
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +1
Query: 301 RSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINH 480
+ + A H RD L G F G + S+ + Y N LH +A + H
Sbjct: 458 KGIIAHHLRTDRDVSQLFTKLTKGVVFDFYGNYYLMPLSLALEAHYQ-NRLHRWIAWLKH 516
Query: 481 NHV 489
NH+
Sbjct: 517 NHL 519
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 180 YQDCGWFCRQRWCSPPSCWTCDR 248
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 241 QVQQDGGEHQRWRQNHP---QSWYRRSQRLPRRA*DSRPGGYRSW 116
++ + G EH+ W + H Q W R QR+ + P Y +
Sbjct: 1463 RISRRGREHENWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEY 1507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.127 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,215
Number of Sequences: 37544
Number of extensions: 304070
Number of successful extensions: 1427
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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