Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e19f
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated... 29 2.7
U14525-1|AAA50786.1| 434|Caenorhabditis elegans avermectin-sens... 29 2.7
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 28 4.7
AL023827-1|CAA19444.1| 209|Caenorhabditis elegans Hypothetical ... 28 4.7
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 28 6.2
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 28 6.2
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 28 6.2
M98552-7|AAK82925.2| 355|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF039710-5|AAB96689.2| 394|Caenorhabditis elegans Hypothetical ... 27 8.2
>U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 2 protein.
Length = 434
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 305 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 469
+++V W SF + +STA GV + + T ++ N KL P++ V +V LGA
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318
Query: 470 VTGRNLE 490
V G LE
Sbjct: 319 VFGALLE 325
>U14525-1|AAA50786.1| 434|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl beta protein.
Length = 434
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 305 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 469
+++V W SF + +STA GV + + T ++ N KL P++ V +V LGA
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318
Query: 470 VTGRNLE 490
V G LE
Sbjct: 319 VFGALLE 325
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 359 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 469
+ +T S + TF LK+P VHI+G + G G
Sbjct: 10 LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46
>AL023827-1|CAA19444.1| 209|Caenorhabditis elegans Hypothetical
protein Y12A6A.1 protein.
Length = 209
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 71 AIQNLERFGSLNKYYYYSNAQRNSITLTED-HFPTGNDTAAPFNNNSDIVVIIHGHSGTA 247
++ + + FGS ++ + AQ +I TE+ H TG T A N ++ + G
Sbjct: 122 SLDDRQIFGSFDERSPINMAQLQAIIATEENHIKTGAYTTAVTNILKEVAASMTPQKGVT 181
Query: 248 TTT 256
TTT
Sbjct: 182 TTT 184
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 326 SFSLSTYSTAVMAVTGVGSSIATFLKNLK--LPLNKVHIVGFNLGAHVAGVTGR-NLEGK 496
+F +TYST + T +GS++ T + N + PL + N + V+G L K
Sbjct: 333 AFQHNTYSTTISPTTPIGSTVITVVANSENNTPLTYSLLADTNT-VSIDEVSGNVVLRKK 391
Query: 497 VARITGLDPSARDWENNV 550
+ + L+ +A D EN V
Sbjct: 392 LEKPETLNVTASDGENVV 409
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 89 RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 178
+F SL+ YY+ Q + + + EDH N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 89 RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 178
+F SL+ YY+ Q + + + EDH N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505
>M98552-7|AAK82925.2| 355|Caenorhabditis elegans Hypothetical
protein ZK370.7 protein.
Length = 355
Score = 27.5 bits (58), Expect = 8.2
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Frame = +2
Query: 14 KMLKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAP 193
++LKL+ A+ + CN D+ Q E+ YY NA R ++ F A
Sbjct: 83 EILKLVITFAMFYKECNFDSRQFSEQVSK-----YYINAPRELAKMSVPSF------AYA 131
Query: 194 FNNNSDIVVIIHGHSGT-ATTTINPIVKDAF--LTSGDYNVIVVDWSSFSLSTYSTAVMA 364
NN D V + + +G TT +V AF + W + +L + A +
Sbjct: 132 LQNNLDFVGLSNLDAGLYQVTTQLKVVSTAFFMMLFLGRKFSTRRWMAITLLMFGVAFVQ 191
Query: 365 VTGVGSSIATFLKNLKLPLNKVHIVGFN 448
+ V +S A N K + +IVG +
Sbjct: 192 MNNVSASEA----NTKRETAENYIVGLS 215
>AF039710-5|AAB96689.2| 394|Caenorhabditis elegans Hypothetical
protein C46E10.4 protein.
Length = 394
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 283 KCVFNNRVDRRRSSATVTVYYYDNIRIIVKGRSSIVSSG 167
+ + NR R R + TVY+ + +++ + G+S +V G
Sbjct: 326 RLIEENRASRCRITKLGTVYFANGVKLSIDGKSELVVYG 364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,375
Number of Sequences: 27780
Number of extensions: 301871
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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