Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e19f
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.12
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.27
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.27
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 31 0.62
At5g40380.1 68418.m04898 protein kinase family protein contains ... 29 1.9
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai... 29 1.9
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ... 29 3.3
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 28 5.8
At4g21500.1 68417.m03108 expressed protein ; expression support... 28 5.8
At4g21326.1 68417.m03081 subtilase family protein contains simil... 28 5.8
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 28 5.8
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 7.7
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 27 7.7
At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing... 27 7.7
At1g30090.1 68414.m03678 kelch repeat-containing F-box family pr... 27 7.7
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 302 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 481
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 482 NLEGKVARITG 514
+ GK+ + G
Sbjct: 454 TISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +2
Query: 302 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 481
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 482 NLEGKVAR 505
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +2
Query: 302 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 481
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 482 NLEGKVAR 505
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 77 QNLERFGSLNKYYYYSNAQRNSITLTEDH---FPTG--NDTAAPFNNNSDIVVIIH 229
++L +GS +Y+Y +N +T T+ + PTG D P N ++V I H
Sbjct: 53 RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108
>At5g40380.1 68418.m04898 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 591
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 149 LTEDHFPTGNDTAAPFNNNSDIVVIIHG-----HSGTATTTINPIVK 274
LTE +P + T+ PF S + + G HS +TTT N +VK
Sbjct: 528 LTERDYPIPSPTSPPFLRVSSLTTDLEGSSTISHSTNSTTTFNTMVK 574
>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 1009
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +2
Query: 107 KYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFL 286
K + +++ R S T + N +A NSD H H NP + DAF+
Sbjct: 855 KQFMSASSSRESNTESLARLVDTNSSAGKTEINSDD----HQHD-IHNMFSNPRIHDAFM 909
Query: 287 TSGDYNVIVVDWSSFSL 337
+GDY+ +VV F L
Sbjct: 910 GAGDYSGLVVPDGKFGL 926
>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 856
Score = 28.7 bits (61), Expect = 3.3
Identities = 29/109 (26%), Positives = 47/109 (43%)
Frame = +2
Query: 113 YYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTS 292
Y +N RN+ T++ + T + NN + ++ +G T T++ I L
Sbjct: 739 YTGTNCLRNNATISGSDLNLPSITVSKLNNTRTVQRLMTNIAGNETYTVSLITPFDVL-- 796
Query: 293 GDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIV 439
NV +S S T +V+ SSI++F +KL N HIV
Sbjct: 797 --INVSPTQFSIASGETKLLSVILTAKRNSSISSF-GGIKLLGNAGHIV 842
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 220 NNTRSQWHCYDDDQPYC*RRIFNKWR---L*RYRC 315
NNTRS+ C+ D+ C ++ KW+ YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648
>At4g21500.1 68417.m03108 expressed protein ; expression supported
by MPSS
Length = 215
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 77 QNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFN 199
+ +ERF SL+ Y S+++ +S + +E +FP D +P N
Sbjct: 122 RKMERFPSLSLCYPESDSESDSASSSEFNFPEIGDWNSPEN 162
>At4g21326.1 68417.m03081 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 690
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/86 (27%), Positives = 33/86 (38%)
Frame = +2
Query: 236 SGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 415
S ATTTIN SGDY +V F Y + + SS + +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413
Query: 416 PLNKVHIVGFNLGAHVAGVTGRNLEG 493
K +VG + V G + R G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 220 NNTRSQWHCYDDDQPYC*RRIFNKWR 297
NNTRS+ C+ D+ C ++ KW+
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 618 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 460
L + P+ T+++ VP ST S S+ + + P +LPS PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 503 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 601
R+TG+ P A D +++ +G AQ E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386
>At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing
enzyme C-terminal domain-containing protein / hydrolase,
alpha/beta fold family protein contains Pfam profiles
PF01188: Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain, PF00561: hydrolase,
alpha/beta fold family
Length = 656
Score = 27.5 bits (58), Expect = 7.7
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Frame = +2
Query: 197 NNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTY----STAVMA 364
N + + +HG GT I PI+ SG I VD S S +
Sbjct: 377 NAEGSVALFLHGFLGTGEEWI-PIMTGI---SGSARCISVDIPGHGRSRVQSHASETQTS 432
Query: 365 VTGVGSSIATFLKNL--KLPLNKVHIVGFNLGAHVAGVTGRNLEGKV--ARITGLDPSAR 532
T IA L L ++ KV IVG+++GA +A K+ A + P +
Sbjct: 433 PTFSMEMIAEALYKLIEQITPGKVTIVGYSMGARIALYMALRFSNKIEGAVVVSGSPGLK 492
Query: 533 DWENNVLRLGTNDAQ 577
D +R T+D++
Sbjct: 493 DPVARKIRSATDDSK 507
>At1g30090.1 68414.m03678 kelch repeat-containing F-box family
protein similar to SP|O95198 Kelch-like protein 2
(Actin-binding protein Mayven) {Homo sapiens}; contains
Pfam profiles PF01344: Kelch motif, PF00646: F-box
domain
Length = 398
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -2
Query: 137 FSVHCYSNNIYL---NFQIAPSFEWHLRCKRQMRW 42
F+V+CY N +Y+ N +A W K +RW
Sbjct: 342 FAVNCYGNRVYVVGRNLHLAVGNIWQSENKFAVRW 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,593
Number of Sequences: 28952
Number of extensions: 269420
Number of successful extensions: 691
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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