Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e17r
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     86   6e-18
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     85   2e-17
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    83   8e-17
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   5.2  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    27   5.2  
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9...    26   9.1  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 86.2 bits (204), Expect = 6e-18
 Identities = 38/58 (65%), Positives = 50/58 (86%)
 Frame = -1

Query: 176 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQ 3
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQ
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQ 58


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 37/58 (63%), Positives = 49/58 (84%)
 Frame = -1

Query: 176 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQ 3
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQ
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQ 58


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 82.6 bits (195), Expect = 8e-17
 Identities = 36/57 (63%), Positives = 48/57 (84%)
 Frame = -1

Query: 173 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQ 3
           P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQ
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQ 88


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -1

Query: 176 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 15
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 213 EIYTFNEKNYHKSL*PRHFSFKGENI--FYNRMKITRLNRIN 332
           EIY    KNYHKSL  R F FK ++      +  +T +  IN
Sbjct: 794 EIYA---KNYHKSLDHRSFYFKQQDTKNLSTKSLLTEIKEIN 832


>05_01_0002 -
           8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
           9802-9902,10016-10651,10820-10899,11014-11673,
           11787-12041,12154-12281,12515-12669,12735-12919,
           13020-13049,13164-13239,13371-13504,13703-13994,
           14400-14567,14647-14745,14843-15014,15103-15281
          Length = 1352

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 213 EIYTFNEKNYHKSL*PRHFSFKGEN 287
           EIY    KNYHKSL  R F FK ++
Sbjct: 596 EIYA---KNYHKSLDHRSFYFKQQD 617


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,460
Number of Sequences: 37544
Number of extensions: 127665
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)