Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e17r
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   4.1  
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 27   4.1  
SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09)         27   4.1  
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   4.1  
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)                 27   4.1  
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   4.1  
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.1  
SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)                   27   5.4  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        26   7.1  
SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)                   26   7.1  
SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)                 26   9.4  
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)           26   9.4  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      26   9.4  
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  26   9.4  

>SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 384

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 152 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 63
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 191 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 220


>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 402

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -1

Query: 191 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 15
           L V ++  E+      LI A+R  AKS ++K  PE   F  +C+   Y L++  K+ A+
Sbjct: 137 LGVSDVDAELLKTARSLISAQRAGAKS-EVK--PEMSAFVSKCNAAAYDLILDGKQTAD 192


>SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09)
          Length = 385

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +3

Query: 27  FVSDDQGVQEP*ASNLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVEDE*FSTST 206
           F+S  + +QE    NL  D     LY  R+  +  RLN ++ + F   R+++ + F    
Sbjct: 258 FISGKKILQELCKENLGWDDEVSDLYRVRWEKW--RLNLQLLEKFSMDRYLKPQDFGPVM 315

Query: 207 VREIYTFNE 233
           VREI+ F++
Sbjct: 316 VREIHNFSD 324


>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 398

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 152 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 63
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 359 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 388


>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 152 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 63
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
          Length = 856

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 152 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 63
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 708

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 152 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 63
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  VMTRVYRNLEHRTLNLTFSGFFFILT 111
           VM R    +  RT++LTFS F  +LT
Sbjct: 198 VMARTVSQITTRTISLTFSRFMVLLT 223


>SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)
          Length = 74

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 KDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRF-LYTLVITDKEKAE 15
           KD+KD   K +    + VK KKN + V+ ++  ++  L  ++IT K K E
Sbjct: 25  KDLKDVQEKHKTDKEELVKCKKNIKTVEQELATTKHQLNEMLITVKTKIE 74


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 179  NMPREIKDIKDFLIKARRKDAKSVKIKKNPENV 81
            N  RE KD+   L ++RR +AK+V   KN EN+
Sbjct: 1276 NRVRE-KDLTTALDESRRAEAKAVDKVKNLENI 1307


>SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)
          Length = 465

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 127 GKTP-NRSK*RRTLRMSSSRFDAQGSCTPWSSL 32
           GK+P NR K R  L  SSS  D + S   WS L
Sbjct: 2   GKSPSNRDKMREMLEYSSSNDDFRESEDEWSPL 34


>SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)
          Length = 303

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 191 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 15
           L V ++  E+      LI A+R  AK+      PE   F  +C+   Y L+I  K+ A+
Sbjct: 38  LGVSDVDAELLKTARSLISAQRSSAKN---GVTPEMSAFVSKCNAAAYDLIIDGKQTAD 93


>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
          Length = 123

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 167 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKL 9
           E++ IKD   +   K+ + V+ K  P  VKF +      YT V+   EK + L
Sbjct: 31  ELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGI-----AYTQVVDLIEKDQVL 78


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 125  KDAKSVKIKKNPENVKFKVRCS 60
            +DA    I++NPE V FK+ CS
Sbjct: 1793 EDAVVCCIRENPEPVVFKISCS 1814


>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 577

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 155 IKDFLIKARRKDAKSVKIKKNPENVKFKVRC 63
           +K+FLI+      K+ + K NPE V  ++RC
Sbjct: 476 VKEFLIRKFELGEKTGR-KSNPEQVAIEMRC 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,422,598
Number of Sequences: 59808
Number of extensions: 165626
Number of successful extensions: 363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)