Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e17r
(344 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26876-1|CAA81488.1| 70|Homo sapiens ribosomal protein protein. 107 9e-24
BC000603-1|AAH00603.1| 70|Homo sapiens ribosomal protein L38 p... 107 9e-24
AB007185-1|BAA25844.1| 37|Homo sapiens ribosomal protein L38 p... 54 2e-07
Y15233-1|CAA75517.1| 847|Homo sapiens liver glycogen phosphoryl... 28 6.8
M36807-1|AAA35906.1| 366|Homo sapiens protein ( Human liver gly... 28 6.8
M14636-1|AAA52577.1| 847|Homo sapiens PYGL protein. 28 6.8
BC110791-1|AAI10792.2| 847|Homo sapiens phosphorylase, glycogen... 28 6.8
BC095850-1|AAH95850.2| 847|Homo sapiens phosphorylase, glycogen... 28 6.8
BC082229-1|AAH82229.2| 847|Homo sapiens phosphorylase, glycogen... 28 6.8
BC009895-1|AAH09895.3| 846|Homo sapiens phosphorylase, glycogen... 28 6.8
AF066858-1|AAC17450.1| 847|Homo sapiens liver glycogen phosphor... 28 6.8
AF046798-1|AAC18079.1| 847|Homo sapiens glycogen phosphorylase ... 28 6.8
AF046785-1|AAC23504.1| 847|Homo sapiens liver glycogen phosphor... 28 6.8
>Z26876-1|CAA81488.1| 70|Homo sapiens ribosomal protein protein.
Length = 70
Score = 107 bits (257), Expect = 9e-24
Identities = 50/58 (86%), Positives = 56/58 (96%)
Frame = -1
Query: 176 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQ 3
MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQ
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQ 58
>BC000603-1|AAH00603.1| 70|Homo sapiens ribosomal protein L38
protein.
Length = 70
Score = 107 bits (257), Expect = 9e-24
Identities = 50/58 (86%), Positives = 56/58 (96%)
Frame = -1
Query: 176 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQ 3
MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQ
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQ 58
>AB007185-1|BAA25844.1| 37|Homo sapiens ribosomal protein L38
protein.
Length = 37
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -1
Query: 77 FKVRCSRFLYTLVITDKEKAEKLKQ 3
FKVRCSR+LYTLVITDKEKAEKLKQ
Sbjct: 1 FKVRCSRYLYTLVITDKEKAEKLKQ 25
>Y15233-1|CAA75517.1| 847|Homo sapiens liver glycogen phosphorylase
protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>M36807-1|AAA35906.1| 366|Homo sapiens protein ( Human liver
glycogen phosphorylase type IV mRNA, 3' end. ).
Length = 366
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 258 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 294
>M14636-1|AAA52577.1| 847|Homo sapiens PYGL protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>BC110791-1|AAI10792.2| 847|Homo sapiens phosphorylase, glycogen;
liver (Hers disease, glycogen storage disease type VI)
protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>BC095850-1|AAH95850.2| 847|Homo sapiens phosphorylase, glycogen;
liver (Hers disease, glycogen storage disease type VI)
protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>BC082229-1|AAH82229.2| 847|Homo sapiens phosphorylase, glycogen;
liver (Hers disease, glycogen storage disease type VI)
protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>BC009895-1|AAH09895.3| 846|Homo sapiens phosphorylase, glycogen;
liver (Hers disease, glycogen storage disease type VI)
protein.
Length = 846
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 738 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 774
>AF066858-1|AAC17450.1| 847|Homo sapiens liver glycogen
phosphorylase protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>AF046798-1|AAC18079.1| 847|Homo sapiens glycogen phosphorylase
protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
>AF046785-1|AAC23504.1| 847|Homo sapiens liver glycogen
phosphorylase protein.
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 15 LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 125
L L+ D G P +L DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,558,299
Number of Sequences: 237096
Number of extensions: 753633
Number of successful extensions: 1145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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