Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e17f
(411 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 27 6.0
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 27 6.0
SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09) 27 6.0
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 27 6.0
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) 27 6.0
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 27 6.0
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2) 27 7.9
>SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 28.7 bits (61), Expect = 2.0
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 178 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFK-VRCSRF-LYTLVITDKEKAEKLKQSLP 351
E ++ KDFL A R KSVK K+ + + ++ +R+ L T+ DK+ E++ +
Sbjct: 37 EKEEEKDFLHSAERNSLKSVKPKEEAKELVIPLMKKNRWILPTVEGLDKQAMEEVIKEAQ 96
Query: 352 PGLQVKE 372
LQ KE
Sbjct: 97 KDLQSKE 103
>SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 307 ITDKEKAEKLKQSLPPGLQVKEV 375
I + E+ EK+KQ PGL VK++
Sbjct: 134 ILENERREKIKQFTEPGLTVKKI 156
>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1421
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 172 PREIKDIKDFLIKARRK-DAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 348
P+ +D+ + L++ RR A + IKK PE++ ++ + L T + + + S+
Sbjct: 731 PKLQQDLFNVLVRFRRNLVALACDIKKMPEDINMNIQWQQIETVLKSTYMDDSIDIVASV 790
Query: 349 PPGLQVKEV 375
G+++ EV
Sbjct: 791 EEGIELYEV 799
>SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 384
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 193 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 282
K+F+ K R K K V +K P VKF C
Sbjct: 191 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 220
>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 402
Score = 27.1 bits (57), Expect = 6.0
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 154 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 330
L V ++ E+ LI A+R AKS ++K PE F +C+ Y L++ K+ A+
Sbjct: 137 LGVSDVDAELLKTARSLISAQRAGAKS-EVK--PEMSAFVSKCNAAAYDLILDGKQTAD 192
>SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09)
Length = 385
Score = 27.1 bits (57), Expect = 6.0
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = -1
Query: 318 FVSDDQGVQEP*ASNLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVEDE*FSTST 139
F+S + +QE NL D LY R+ + RLN ++ + F R+++ + F
Sbjct: 258 FISGKKILQELCKENLGWDDEVSDLYRVRWEKW--RLNLQLLEKFSMDRYLKPQDFGPVM 315
Query: 138 VREIYTFNE 112
VREI+ F++
Sbjct: 316 VREIHNFSD 324
>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 398
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 193 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 282
K+F+ K R K K V +K P VKF C
Sbjct: 359 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 388
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 193 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 282
K+F+ K R K K V +K P VKF C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268
>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
Length = 856
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 193 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 282
K+F+ K R K K V +K P VKF C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268
>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 708
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 193 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 282
K+F+ K R K K V +K P VKF C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268
>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 311 VMTRVYRNLEHRTLNLTFSGFFFILT 234
VM R + RT++LTFS F +LT
Sbjct: 198 VMARTVSQITTRTISLTFSRFMVLLT 223
>SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)
Length = 74
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 184 KDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRF-LYTLVITDKEKAE 330
KD+KD K + + VK KKN + V+ ++ ++ L ++IT K K E
Sbjct: 25 KDLKDVQEKHKTDKEELVKCKKNIKTVEQELATTKHQLNEMLITVKTKIE 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,755
Number of Sequences: 59808
Number of extensions: 205067
Number of successful extensions: 458
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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