Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e17f
         (411 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ...   105   9e-24
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)           105   9e-24
At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)...    28   2.1  
At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai...    27   3.7  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    27   6.5  
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    26   8.6  
At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related c...    26   8.6  

>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
           RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
           EMBL:X69979
          Length = 69

 Score =  105 bits (253), Expect = 9e-24
 Identities = 47/69 (68%), Positives = 62/69 (89%)
 Frame = +1

Query: 169 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 348
           MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 349 PPGLQVKEV 375
           PPGL V+++
Sbjct: 61  PPGLSVQDL 69


>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 
          Length = 69

 Score =  105 bits (253), Expect = 9e-24
 Identities = 47/69 (68%), Positives = 62/69 (89%)
 Frame = +1

Query: 169 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 348
           MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 349 PPGLQVKEV 375
           PPGL V+++
Sbjct: 61  PPGLSVQDL 69


>At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)
           EXL6 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana]
          Length = 343

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 154 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 276
           L V +   ++KD KD+L K RR   +  K+K+   N  F +
Sbjct: 125 LRVLSAGDQVKDFKDYLKKLRRVVKRKKKVKEIVSNAVFLI 165


>At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 540

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 333 FLSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRF-GVFPPRLN 205
           FL L+ VS+  G++ P    L   +L+ LLYFDR+  +  P LN
Sbjct: 477 FLDLVRVSESYGLKFPREFAL---LLKQLLYFDRYTRLLAPNLN 517


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 181 IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFL 294
           +KDI   L++    +  S+  KK+  N++ K+R  RF+
Sbjct: 531 MKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFI 568


>At2g31900.1 68415.m03897 myosin family protein contains Pfam
            profiles: PF00063 myosin head (motor domain), PF01843 DIL
            domain, PF00612 IQ calmodulin-binding motif, PF02736
            myosin N-terminal SH3-like domain
          Length = 1556

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 208  KARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 375
            KA  +DAK+ +I K   N+          Y  +I DKE A+   +  PP   +KEV
Sbjct: 911  KADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPP--IIKEV 964


>At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related
           contains weak similarity to BR1 [Chironomus tentans]
           gi|7042|emb|CAA45607
          Length = 468

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +1

Query: 103 IIFFVKSVYFSYSAG*KLFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVK 267
           I+  V +V F+  A   LF++N+  E + I DF+  AR  DA  ++  KN + VK
Sbjct: 230 ILLIVVAVLFTVVAA--LFIWNISCERRGITDFI--ARYPDA-DLRTAKNGQYVK 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,032,794
Number of Sequences: 28952
Number of extensions: 148978
Number of successful extensions: 381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)