Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e16r
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57210.1 68416.m06369 hypothetical protein contains Pfam prof...    29   2.9  
At5g14150.1 68418.m01655 expressed protein contains Pfam profile...    28   5.0  
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim...    27   8.8  

>At3g57210.1 68416.m06369 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 109

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 304 LNSPKW*RTGIELMATVSSQSKSIFKYSNTQIISVASKSLTPPA 435
           L +  W R  +EL   +S ++ +    S  +I+SVA +++ PP+
Sbjct: 28  LRANDWIRLYLELSVAISDRTTTDHDLSGLRIVSVAIQTMEPPS 71


>At5g14150.1 68418.m01655 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 383

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 495 CDKTFDFFKNPDYYSCPSPRRILDSYKSSMHLGESYTLPRFFF 623
           C  + DF +NPD+ S P      +S  SS+ L ++ TLP + F
Sbjct: 16  CCASSDFLENPDFES-PPLNLPTNSNASSVSLDQNSTLPGWTF 57


>At1g02950.2 68414.m00263 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 245

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 627 EEKKIVVEYKIHQGAYLTYTSQVCALVKGKSSSLD 523
           E KK+V  YK+H   + T T +V A++  K  S +
Sbjct: 19  EVKKLVAGYKVHGDPFSTNTRRVLAVLHEKRLSYE 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,266
Number of Sequences: 28952
Number of extensions: 234535
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)