Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e16f
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 28 0.98
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 27 1.7
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.3
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 27 3.0
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 5.2
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 25 6.9
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 25 9.1
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 25 9.1
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 25 9.1
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -3
Query: 295 LYYTLYSSDRTIRCHCGSLLYFFYINHPVFRFSLHKGMNVINNSSSL 155
L+Y + R + C C Y YI P+ N+I NS +
Sbjct: 229 LFYYDSTIQRVLTCDCQRPSYTVYIEDPIIGNGFSSAWNLIKNSDGI 275
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -3
Query: 274 SDRTIRCHCGSLLYFFYIN--HPVF-RFSLHKGMNVINNSSSLSIEHSVCLCHFATKT 110
++R +CG+ LYF Y N +P F L KG+ I + + I+ FA KT
Sbjct: 66 AERIFCKNCGTTLYFAYTNGKNPYFINAWLFKGIENITFDAQVCIDDKPDCYDFANKT 123
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 214 PVFRFSLHKGMNVINNSSSLSIEHSVCLCHFATKT 110
PV H N++N+ SS+ HS CL ++T
Sbjct: 470 PVLVLLRHLAENLVNHISSIYASHSSCLLQVKSET 504
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 422 ITEKELPTTEKLRIKLKNDINFQGSARSLGRIIKNLGFKWKKIQNNKQILIERTDIRFQ 598
+ +++L + E LR + + S ++ R + + K+ +N QI IER +RF+
Sbjct: 109 LKQEQLDSFEILRKNFRETLEESSSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFE 167
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.0
Identities = 28/115 (24%), Positives = 51/115 (44%)
Frame = +2
Query: 233 VQKRTAMATDSSVATVKRIIQEGGGELPKIFRTPGKKRPRDKPITGLNSIDLGVIKRCIH 412
+Q A AT +A +++ IQE E+ + +T K++ + NS+ I+ I
Sbjct: 77 LQDDLAAATPEELAEMEKQIQELKDEV-SVVKTLYKEKCIELQALN-NSLSPAEIREKIQ 134
Query: 413 NFHITEKELPTTEKLRIKLKNDINFQGSARSLGRIIKNLGFKWKKIQNNKQILIE 577
+ +KE+ T L+N Q S ++ + KN F K N K++ +
Sbjct: 135 SI---DKEIEETSSKLESLRNGTVKQISKEAMQKTDKNYDFAKKGFSNRKKMFYD 186
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = -3
Query: 211 VFRFSLHKGMNVINNSSSLSIEHSV 137
V+ + +HK +N++ S + +EH +
Sbjct: 361 VYTYLIHKSLNILAKSRLVEVEHEI 385
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +2
Query: 449 EKLRIKLKNDINFQGSARSLGRIIKNLGFKWKKIQNNKQ 565
+ + ++ N INFQ S + +++ F W ++ N+++
Sbjct: 294 QPMLVEYTNGINFQQGINSFLQGQQSISFSWSEMDNSRR 332
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 202 FSLHKGMNVINNSSSLSIEHSVCLCHFATKTINN 101
F LHKG+NV+ + +E + F+ +TI +
Sbjct: 682 FGLHKGINVLIEHADFLLETKTPMNLFSDQTIGS 715
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -3
Query: 292 YYTLYSSDRTIRCHCGSLLYFF 227
YY Y DR CH G F+
Sbjct: 273 YYFAYPKDRNQECHAGCAAAFY 294
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 328 SEYFRELSAAFLYYTLYSSDRTIRCHC 248
SEY R L+A L + + ++ + C C
Sbjct: 218 SEYLRRLTAVRLQFDIMKAETMLLCRC 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,267
Number of Sequences: 5004
Number of extensions: 53940
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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