Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e16f
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001...    31   0.77 
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15...    30   1.3  
09_02_0476 + 9728729-9730739,9730930-9730991                           30   1.3  
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           30   1.3  
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    28   7.1  
03_03_0014 + 13749178-13750695                                         28   7.1  
02_03_0368 - 18237099-18237851                                         28   7.1  
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    27   9.4  
03_02_0167 - 6088818-6089870                                           27   9.4  

>08_02_0505 +
           17897038-17898870,17899049-17899108,17900034-17900150,
           17900352-17900389,17900446-17900641
          Length = 747

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 268 RTIRCHCGSLLYFFYINHPVFRFSLHKGMNVINNSSSLSIEHSVCLCHFAT 116
           R++ CH     Y  Y  H V +  +++  +++   S   I H V +CH  T
Sbjct: 541 RSVSCHQSLFPYLVYYCHSVPKVRVYEA-DIMAADSDQKINHGVAICHLDT 590


>11_01_0022 +
           151233-151515,152632-152852,153579-153656,154558-154674,
           155970-156316,156504-157032
          Length = 524

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +2

Query: 116 CCKMTKTNRVFNRQARRIIYNVHSFMKRESEDGVINIKKVQKRTAMATDSSVATVKRIIQ 295
           C  M    + F +  R +I N+HS    E +D + ++  +     + ++  VA      Q
Sbjct: 388 CGLMLSETQRFMQMKREVIENIHS-NNGERQD-ITHLDGLIHDWGVESNRRVAAADHQHQ 445

Query: 296 EGGGELPKIFRTPGK 340
            GGGE P     PG+
Sbjct: 446 HGGGEAPAAAAAPGQ 460


>09_02_0476 + 9728729-9730739,9730930-9730991
          Length = 690

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 268 RTIRCHCGSLLYFFYINHPVFRFSLHKGMNVINNSSSLSIEHSVCLCHFAT 116
           R++ CH     Y  Y  H V    +++  +++   S+  I H V +CH  T
Sbjct: 604 RSVSCHQSLFPYLVYYCHSVPTVRVYEA-DILAVDSNQKINHGVAICHLDT 653


>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 77  YIFYQAHLI-IYCFCCKMTKTNR 142
           ++ Y  H+  +YCFCCK+ K+N+
Sbjct: 243 WLVYSKHVDKVYCFCCKLFKSNQ 265


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 41  AAKYIIVQFY*PYIFYQAHLIIYCFCCKMTKTN-RVFNRQARRIIY 175
           A KY +++ Y  Y +Y+ HL+I C   K      + FNR++   +Y
Sbjct: 861 ADKYHLLRLY-DYFYYREHLLIVCELLKANLYEFQKFNRESGGEVY 905


>03_03_0014 + 13749178-13750695
          Length = 505

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 315 GSSPPPSCIIR---FTVATELSVAIAVRFCTFF 226
           G +PPP+C++       A+EL+  +AV   TFF
Sbjct: 114 GGAPPPTCVVADFCHPWASELAAGLAVPRLTFF 146


>02_03_0368 - 18237099-18237851
          Length = 250

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 185 SFMKRESEDGVINIKKVQKRTAMATDSSVATVKRIIQEGGGELPKIFRTPGKKRPRDKPI 364
           +F +   + GV+++        +    +VA   + +  GGGELP +FR     R +  PI
Sbjct: 157 AFYQGHGDAGVVHV--AMGDATLEGAGAVAEAMQQVVGGGGELPLVFRGEVPVRVKVGPI 214

Query: 365 T 367
           T
Sbjct: 215 T 215


>07_03_0715 +
           20889399-20890111,20890950-20891060,20891128-20891338,
           20891414-20891474,20891719-20891956,20892046-20892196,
           20892415-20892703,20893464-20894207,20894720-20894851,
           20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 253 HCGSLLYFFYINHPVFRFSLHK 188
           HC  LL F +++ PVF F  HK
Sbjct: 248 HCYCLLSFHHLHTPVFLFPKHK 269


>03_02_0167 - 6088818-6089870
          Length = 350

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 300 PSCIIRFTVATELSVAIAVRFCTFFILITPSSDSLFIK 187
           P C I F VA  ++V++A     FF+   P    +  K
Sbjct: 150 PCCCIVFQVAWRVAVSVAFALLVFFVATKPRDPGVTFK 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,550
Number of Sequences: 37544
Number of extensions: 306520
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)