Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e16f
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21572| Best HMM Match : Pkinase (HMM E-Value=0.016)                 32   0.45 
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   29   2.4  
SB_29255| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_14921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_10359| Best HMM Match : CoA_transf_3 (HMM E-Value=0)                29   4.2  
SB_4040| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00044)         28   5.5  
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      28   7.3  
SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)                    27   9.7  
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  27   9.7  

>SB_21572| Best HMM Match : Pkinase (HMM E-Value=0.016)
          Length = 481

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 395 IKRCIHNFHITEKELPTTEKLRIKLKNDINFQGSARSLGRIIKNLGFKWKKIQNNKQI 568
           ++RC+H  H TE E      +++KL  +I      +    IIK LGF W+   N+  I
Sbjct: 140 VQRCLHRNHTTEHE--CFNLIKLKLAKEILILKQLQQT-NIIKLLGFCWQNELNSADI 194


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 275  TVKRIIQEGGGELPKIFRTPGKKRPRDKPITGLNSIDLGVIKR 403
            TV+ II EGG  L  + +TP  +R   K ++  NS DL + K+
Sbjct: 1132 TVEEIIAEGGFALVFLVKTPQGQRLALKRVSVNNSHDLDICKQ 1174


>SB_29255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 38  TAAKYIIVQFY*PYIFYQAHLII 106
           T++ YII+ F  PY+FY A++I+
Sbjct: 32  TSSVYIILTFIVPYVFYVANIIL 54


>SB_14921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 314 PKIFRTPGKKRPRDKPITGLNSIDL 388
           PK+ RTPG   PR  P  G +++D+
Sbjct: 190 PKLSRTPGNASPRQLPKIGEHTVDV 214


>SB_10359| Best HMM Match : CoA_transf_3 (HMM E-Value=0)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 314 PKIFRTPGKKRPRDKPITGLNSIDL 388
           PK+ RTPG   PR  P  G +++D+
Sbjct: 329 PKLSRTPGNASPRQLPKIGEHTVDV 353


>SB_4040| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00044)
          Length = 817

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 393 TPRSIEFKPVI-GLSRGLFFPGVLNILGSSP 304
           T + +++   I  L RG++F G++NILG +P
Sbjct: 175 TNQDVKYNGAIKNLRRGIYFKGMVNILGFTP 205


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 229 FYINHPVFRFSLHKGMNVINNSSSLSIEHSVCL 131
           F   HP   +S  + M++ NNSSSL+  H  CL
Sbjct: 326 FKRQHPQITYSQSELMDLRNNSSSLTDFHIFCL 358


>SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)
          Length = 240

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 388 RSD*AVYTQFPYNREGTADYGETANKIKKRYKFPGVRTKFGANH*K 525
           R D A YT F  N++  +D+  T       Y  PG+      +H K
Sbjct: 168 RFDIAYYTMFMCNKKRLSDFPNTWRHTLDIYNMPGIADTVNLDHIK 213


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/26 (34%), Positives = 21/26 (80%)
 Frame = +2

Query: 371 LNSIDLGVIKRCIHNFHITEKELPTT 448
           +++ +L  +++ IHNF+++++ELP T
Sbjct: 1   MSNEELETLQKWIHNFNLSKQELPQT 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,100
Number of Sequences: 59808
Number of extensions: 372918
Number of successful extensions: 902
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)