Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e16f
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid tran...    33   0.23 
Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    28   4.9  
U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    28   6.4  
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid
           transporter protein 2 protein.
          Length = 483

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -1

Query: 624 IIRCRYSILWKRISVLSIRICLLFWIFFHLKPKFLMIRPKLRADPWK 484
           +++ R+++    ++   I+I LL+ I F L   FL+I P   +DPW+
Sbjct: 385 LLKLRFTMPENVLNARPIKISLLWPILFFLMCLFLLILPFFHSDPWE 431


>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +2

Query: 149 NRQARRIIYNVHSFMKRESEDGVINIKKVQKRTAMATDS-SVATVKRIIQEGGGEL-PKI 322
           N + +R + +++   K +SE+ V+  KK+    +  +D+ S AT    I  G  E   + 
Sbjct: 619 NLRRKRQLLDIN-LQKNQSEEPVVPAKKISIIESGDSDNESNATDSSFIGNGHMEFRDRA 677

Query: 323 FRTPGKKRPRDKPITGLN 376
           F +P    PR++PI GL+
Sbjct: 678 FTSPMMSSPREEPIIGLS 695


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 316 RELSAAFLYYTLYSSDRTIRCHCGSLLYFFYI--NHPVFRFSLHKGMNVINNSSSLSIE 146
           R+L +  L Y+  S   +I   C  + +   I  ++ VFRFSLH+ + VI  + +L IE
Sbjct: 598 RQLKSILLTYSGKSEVESI-FECWKMYWTPKILRSNRVFRFSLHQAIEVITVADNLKIE 655


>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 348 GLFFPGVLNILGSSPPPSCIIRFTVATELSVAIAVRFCTFFILITPSSDSLFIK 187
           G+ F G L  L     PSC+  +TV    +    + +C  F+L  P   S+ ++
Sbjct: 21  GIIFNGFLLFLIFFKSPSCLTPYTVFLANTSITQLGYCICFLLTVPRVISINLR 74


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 636 CLYFIIRCRYSILWKRISVLSIRI--CLLFWIFFH 538
           C Y  + CR  I+W+ + +L I    CL+F +F++
Sbjct: 60  CKYTFLCCRCVIVWRCLWLLIIFFVGCLIFTLFYY 94


>Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical
           protein F54G8.2 protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 374 NSIDLGVIKRCIHNFHITEKELPTTEKLRIKLKNDINF--QGSARSLGRIIKNL 529
           N   +GV     H FH+  ++ P  EK   +++N + +   G++ +L    KNL
Sbjct: 581 NYFSIGVDASIAHRFHVMREKFP--EKFNSRMRNKLWYFELGTSETLSSSCKNL 632


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,739
Number of Sequences: 27780
Number of extensions: 296772
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)