Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e16f
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.47 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 337 PRCSEYFRELSAAFLYYTLYSSDRTIRCHCGSLLYFFYINHPVF 206
           P+C+ +  +LS A    T+ S     RC+  +   F ++N  V+
Sbjct: 116 PKCAAFLFQLSFATTSTTIVSGAMAERCNFKAYCLFSFLNTIVY 159


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/56 (19%), Positives = 22/56 (39%)
 Frame = +2

Query: 86  YQAHLIIYCFCCKMTKTNRVFNRQARRIIYNVHSFMKRESEDGVINIKKVQKRTAM 253
           Y+AH    C CC     +      A    YN  ++     +   + ++++ +R  M
Sbjct: 739 YEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPM 794


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 235 YFFYINHPVFRFSLHKGMNVINNSSSLSIEHSVCLCHFATKTINN 101
           YFF     + R+ L +  N +   S +S++H +   ++ T    N
Sbjct: 258 YFFLHKQVLNRYYLERLSNDMGEVSYVSLDHPIPTGYYPTMRFRN 302


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 235 YFFYINHPVFRFSLHKGMNVINNSSSLSIEHSVCLCHFATKTINN 101
           YFF     + R+ L +  N +   S +S++H +   ++ T    N
Sbjct: 258 YFFLHKQVLNRYYLERLSNDMGEVSYVSLDHPIPTGYYPTMRFRN 302


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +2

Query: 407 IHNFHITEKELPTTEKLRIKLKNDINF-QGSARSLG----RIIKNLGFKWKKIQNNKQ 565
           ++  H  E  L  + +++  + ND NF + + R LG     +IKN        QNN Q
Sbjct: 370 MNRIHKNEYMLALSNRMQKIVNNDFNFDEVNFRILGANVNNLIKNTRCAKSNNQNNNQ 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,847
Number of Sequences: 438
Number of extensions: 4479
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)