Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e16f
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23760.1 68414.m02998 BURP domain-containing protein / polyga...    31   0.85 
At1g70370.1 68414.m08095 BURP domain-containing protein / polyga...    30   1.5  
At1g24560.1 68414.m03090 expressed protein                             28   4.5  
At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic...    28   6.0  
At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic...    28   6.0  
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR...    27   7.9  
At1g73460.1 68414.m08504 protein kinase family protein contains ...    27   7.9  
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc...    27   7.9  
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca...    27   7.9  
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca...    27   7.9  

>At1g23760.1 68414.m02998 BURP domain-containing protein /
           polygalacturonase, putative similar to polygalacturonase
           isoenzyme 1 beta subunit [Lycopersicon esculentum]
           GI:170480; contains Pfam profile PF03181: BURP domain
          Length = 622

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 268 RTIRCHCGSLLYFFYINHPVFRFSLHKGMNVINNSSSLSIEHSVCLCHFAT 116
           +++ CH     Y  Y  H V +  +++  ++++  S   I H + +CH  T
Sbjct: 536 KSVSCHQSLYPYLLYYCHSVPKVRVYES-DLLDPKSKAKINHGIAICHMDT 585


>At1g70370.1 68414.m08095 BURP domain-containing protein /
           polygalacturonase, putative similar to polygalacturonase
           isoenzyme 1 beta subunit [Lycopersicon esculentum]
           GI:170480; contains Pfam profile PF03181: BURP domain
          Length = 626

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 268 RTIRCHCGSLLYFFYINHPVFRFSLHKGMNVINNSSSLSIEHSVCLCHFATKT 110
           + + CH     Y  Y  H V +  +++  +++  +S   I H + +CH  T +
Sbjct: 540 KAVSCHQSLYPYLLYYCHSVPKVRVYEA-DLLELNSKKKINHGIAICHMDTSS 591


>At1g24560.1 68414.m03090 expressed protein
          Length = 678

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 347 PRDKPITGLNSIDLGVIKRCIHNFHITEKELPTTEKLRIKLKNDIN 484
           P+ +  TGL S+  GVIKR         +++ TT K R + +  ++
Sbjct: 158 PKSQKYTGLTSVAYGVIKRTNEIVEELVRQIDTTAKSRNEAREQMD 203


>At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic
           isozyme 2 / transaminase A (ASP4) identical to aspartate
           aminotransferase, cytoplasmic isozyme 2 SP:P46646
           [Arabidopsis thaliana]
          Length = 405

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 354 SRGLFFPGVLNILGSSPPPSCII 286
           SRGL F G+L  LG++PP + ++
Sbjct: 158 SRGLDFKGMLEDLGAAPPGAIVV 180


>At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic
           isozyme 2 / transaminase A (ASP4) identical to aspartate
           aminotransferase, cytoplasmic isozyme 2 SP:P46646
           [Arabidopsis thaliana]
          Length = 403

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 354 SRGLFFPGVLNILGSSPPPSCII 286
           SRGL F G+L  LG++PP + ++
Sbjct: 156 SRGLDFKGMLEDLGAAPPGAIVV 178


>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1059

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/77 (22%), Positives = 34/77 (44%)
 Frame = +2

Query: 290 IQEGGGELPKIFRTPGKKRPRDKPITGLNSIDLGVIKRCIHNFHITEKELPTTEKLRIKL 469
           +++  GE  K+F    + +  ++  T    +D G       ++HI + E    EK+ I +
Sbjct: 157 VKKQTGEFGKVFERTCESKTEEQVKTWREVLD-GAATIAGEHWHIWDNEASMIEKISIDV 215

Query: 470 KNDINFQGSARSLGRII 520
            N +N    +R    +I
Sbjct: 216 SNILNRSSPSRDFDDLI 232


>At1g73460.1 68414.m08504 protein kinase family protein contains
            protein kinase domain Pfam:PF00069
          Length = 1169

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 41   AAKYIIVQFY*PYIFYQAHLIIYCFCCKMTKTN-RVFNRQARRIIY 175
            A KY +++ Y  Y +Y+ HL+I C   K        FNR++   +Y
Sbjct: 915  ADKYHLLRLY-DYFYYREHLLIVCELLKANLYEFHKFNRESGGEVY 959


>At1g73450.1 68414.m08503 protein kinase, putative similar to nuclear
            serine/threonine protein kinase GI:3582644 from [Rattus
            norvegicus]
          Length = 1152

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 41   AAKYIIVQFY*PYIFYQAHLIIYCFCCKMTKTN-RVFNRQARRIIY 175
            A KY +++ Y  Y +Y+ HL+I C   K        FNR++   +Y
Sbjct: 898  ADKYHLLRLY-DYFYYREHLLIVCELLKANLYEFHKFNRESGGEVY 942


>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 759

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 IKKVQKRTAMATDSSVATVKRIIQEGGGELPKIF 325
           +K+V      A D+  AT K++ QEG     KIF
Sbjct: 650 LKEVATEKQTAVDTHFATAKKLAQEGDALFVKIF 683


>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 755

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 IKKVQKRTAMATDSSVATVKRIIQEGGGELPKIF 325
           +K+V      A D+  AT K++ QEG     KIF
Sbjct: 646 LKEVATEKQTAVDTHFATAKKLAQEGDALFVKIF 679


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,153,007
Number of Sequences: 28952
Number of extensions: 268841
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)