Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e15r
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   169   5e-43
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   5.2  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   6.9  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   6.9  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  169 bits (410), Expect = 5e-43
 Identities = 98/253 (38%), Positives = 126/253 (49%), Gaps = 3/253 (1%)
 Frame = -2

Query: 765 INWNYX---FIILIATAFIGYVLPXGQISFWGATVITNLLSAIPYLGTILVN*I*GGFAV 595
           + WN     F++ I TAF+GY LP  Q+SFWGATVITNLLSA+P++G  LV+ + GGF+V
Sbjct: 112 MTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSV 171

Query: 594 DNATLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNRNLDKIPFHPFFTFKDXX 415
            N TL RF++                    H  GS+NPLG+  N+D+IP +P++  KD  
Sbjct: 172 SNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLI 231

Query: 414 XXXXXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAYAILRSIPNKLGG 235
                          NPY   +PD   PA+PL TP+ I PE Y L  YAILR+IPN   G
Sbjct: 232 TIFIFLIGINYMAFYNPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLG 291

Query: 234 VXXXXXXXXXXXXLPFTFKKKIQGIQFYPINQXXXXXXXXXXXXXXXIGARPVENPYIIT 55
           V            LP      I+G  F P  +               IG    EN +I  
Sbjct: 292 VIAMLLSILVLLLLPLLDFSAIRGNSFNPFGKFFFWTFVADFVILAWIGGSHPENVFITI 351

Query: 54  GQLLTIIYFLYFF 16
           G + TI YF YFF
Sbjct: 352 GAIATIFYFSYFF 364


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 741 ILIATAFIGYVLPXGQISFWGATVITNLLSAIP 643
           I+ + A++ + LP G    W  T  + ++ AIP
Sbjct: 196 IIFSFAYMDFFLPRGGFLVWVETKFSKIIDAIP 228


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 736 NSNCFHRLCLTXRSNIFLGGNRNYKSIICNPLFR 635
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 741 ILIATAFIGYVLPXGQISFWGATVITNL 658
           +++ + F+GY L     S WGA    N+
Sbjct: 118 LIMRSLFVGYSLTSADFSIWGALKSNNM 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,117
Number of Sequences: 5004
Number of extensions: 35259
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)