Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e15r
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               52   5e-07
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         28   9.6  

>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = -2

Query: 765 INWNYXFIILIATAFIG---YVLPXGQISFWGATVITNLLSAIPYLGTILVN*I*GGFAV 595
           + W    ++ + TA  G   Y LP  QI +W   ++T +  AIP +G+ LV  + G  +V
Sbjct: 44  LTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASV 103

Query: 594 DNATLTRFYT 565
             +TLTRFY+
Sbjct: 104 GQSTLTRFYS 113


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 721  HRLCLTXRSNIFLGGNRNYKSIICNPLFRNYISKLNLRGIC 599
            H +C+T R + F      Y  + C  +  + +S   L G+C
Sbjct: 931  HGICMTRRGDPFCVCTEGYTGLRCKVVINHCLSNPCLNGVC 971


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,499
Number of Sequences: 59808
Number of extensions: 218307
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)