Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e15r
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...   200   1e-51

>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score =  200 bits (487), Expect = 1e-51
 Identities = 105/243 (43%), Positives = 137/243 (56%)
 Frame = -2

Query: 747 FIILIATAFIGYVLPXGQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFY 568
           F+++I TAFIGYVLP GQ+SFWGATVIT+L SAIP +G  +V  + GGF+VDNATL RF+
Sbjct: 127 FLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFF 186

Query: 567 TXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXX 388
           +                    HQ GSNNPLG++  +DKI F+P+F  KD           
Sbjct: 187 SLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFF 246

Query: 387 XXXXXINPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAYAILRSIPNKLGGVXXXXXXXX 208
                  P +LG PDN+ PANP+ TP HI PE YFL  +AILRSIP+K GGV        
Sbjct: 247 SIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIHAILRSIPDKAGGVAAIAPVFI 306

Query: 207 XXXXLPFTFKKKIQGIQFYPINQXXXXXXXXXXXXXXXIGARPVENPYIITGQLLTIIYF 28
               LPF     ++   F PI+Q               IG +PVE P++  GQ+  +++F
Sbjct: 307 CLLALPFFKSMYVRSSSFRPIHQGMFWLLLADCLLLGWIGCQPVEAPFVTIGQISPLVFF 366

Query: 27  LYF 19
           L+F
Sbjct: 367 LFF 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,972
Number of Sequences: 28952
Number of extensions: 164693
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)