BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11e15f (612 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07) 78 6e-15 SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0) 56 2e-08 SB_52148| Best HMM Match : EGF (HMM E-Value=0) 27 9.1 SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 >SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07) Length = 102 Score = 77.8 bits (183), Expect = 6e-15 Identities = 31/56 (55%), Positives = 45/56 (80%) Frame = +3 Query: 171 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFICIYLHIGRGIYYESFN 338 ++Y A++ +AF V++I R+VNYG ++R HANGAS FFIC+Y HIGRG+YY S++ Sbjct: 1 MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHIGRGLYYGSYS 56 >SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0) Length = 135 Score = 56.4 bits (130), Expect = 2e-08 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Frame = +3 Query: 231 VNYG*IIRTLHANGASFFFICIYLHIGRGIYYESFNL--KYV*LXXXXXXXXXXXXXXXX 404 VN+G +IR++H AS + + LH+ R F + + Sbjct: 4 VNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTG 63 Query: 405 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFY 551 Y LP QI +W ++T + AIP +G+ LV + G +V +TLTRFY Sbjct: 64 YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 112 >SB_52148| Best HMM Match : EGF (HMM E-Value=0) Length = 1055 Score = 27.5 bits (58), Expect = 9.1 Identities = 11/41 (26%), Positives = 19/41 (46%) Frame = +2 Query: 398 HRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLRGIC 520 H +C+T R + F Y + C + + +S L G+C Sbjct: 931 HGICMTRRGDPFCVCTEGYTGLRCKVVINHCLSNPCLNGVC 971 >SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 149 Score = 27.5 bits (58), Expect = 9.1 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +2 Query: 338 LKICMINWNYNFIYTNSNCFHRLCLTLRSNIFLG 439 LKI M+N+ Y FI+ C L LRSN+ G Sbjct: 110 LKILMVNYRYKFIFIVKECKVMTDL-LRSNVDSG 142 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,114,025 Number of Sequences: 59808 Number of extensions: 244334 Number of successful extensions: 451 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 442 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 450 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1499981500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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