Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e14r
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1129 - 30595580-30595771,30596119-30597162 31 0.78
11_06_0138 + 20522197-20522670 31 1.0
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 30 1.8
02_05_0239 + 27101440-27101904 29 4.1
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 28 5.5
12_01_0337 - 2591689-2593839 28 7.2
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600 28 7.2
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 28 7.2
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 7.2
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935... 27 9.6
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 27 9.6
03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233 27 9.6
02_05_0928 - 32796810-32797250 27 9.6
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553... 27 9.6
01_05_0394 + 21733751-21734584 27 9.6
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = +2
Query: 428 ATSLRMVAGDQFGCITIELVSTLVPPLKSVTEPRTTVTLVP 550
A SLR V G G I +EL S PP S E R VTL P
Sbjct: 179 AWSLRDVRGSPTGSIEVELASA-APPEASGVEARCVVTLHP 218
>11_06_0138 + 20522197-20522670
Length = 157
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 62 WQPRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPP 172
W P P P DV+P+ + F+ P PR+ PTPP
Sbjct: 81 WLPSPPPGDVVPM-LDSYFVAARWLAP--PRRPPTPP 114
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 62 WQPRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPP 172
W P P P DVI + G F+ R P P +P+PP
Sbjct: 53 WPPTPPPGDVI-LAQGSYFVTAWR--PIPPCWLPSPP 86
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 189 LCTSGRGGVGTCRGDSGGPLVVTRNNRPILIGITSFGSGLGCQVNLPAAYAR 34
LC++ GT S PLV++ + ++ G+T+ GS + AA+AR
Sbjct: 77 LCSAAAAASGTAAASSNLPLVLSIHAHALVSGLTADGSVASHLLTAYAAFAR 128
>02_05_0239 + 27101440-27101904
Length = 154
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 89 VIPIKIGRLFLVTTRGPPESPRQVPTPP 172
V+ + + LF RGPP P PTPP
Sbjct: 23 VLGVWLCYLFQAVARGPPPDPPPPPTPP 50
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 536 VTLVPWLVPSNQQ*AAVNXSVSGNKRSSADARAW 637
+ +P L+P+ Q A N SV NK + ARAW
Sbjct: 522 IPALPPLLPATQNPATQNGSVRINKWYESSARAW 555
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -2
Query: 557 PTKARA*RSFLVP*HSSAVAPELRPVRL*CIRIGLLLPFVMMWPSFTYPVPLLCLIQSIR 378
P A A + LVP + PV + I +GLLLP V + SF V L L+ +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLLLSFPTTVSLHYLLNLLL 158
Query: 377 SL 372
L
Sbjct: 159 RL 160
>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
Length = 251
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 435 DVAVIYLPSPVTLSDTINTIALP 367
+++ + LP P+T S +TIALP
Sbjct: 227 EISTVMLPCPITTSSLCSTIALP 249
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 375 ALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLD 247
A+P G +Q+ + A+ASG S+SG+ TT S V +D
Sbjct: 475 AIPLGLAVQQGDIIQGALASGVIQESNSGAGTTQPCHSEVFID 517
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 137 PPESPRQVPTPPRPLVHKFEDCKTKGKANVQTKLFITSRF 256
PP SP P+PP P K +T GKA K I+ F
Sbjct: 57 PPRSPSPSPSPPPPPPTK-PSRRTLGKARAPKKRSISDLF 95
>09_06_0050 +
20493063-20493137,20493253-20493347,20493450-20493547,
20493684-20493842,20493944-20494055,20494185-20494728,
20494818-20494915,20494990-20495229,20495312-20495426,
20495528-20495732,20495805-20496373
Length = 769
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 471 MHPNWSPATIRN 436
MHPNWSPA +++
Sbjct: 564 MHPNWSPAAVKS 575
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 68 PRPEPNDVIPIKIG-RLFLV-TTRGPPESPRQVPTPPRPLVHKF 193
PRP P P ++FL + PP +P P PP VH F
Sbjct: 9 PRPAPTPPAPAPAPPQVFLRRSVLPPPPAPHHAPPPPGAHVHYF 52
>03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233
Length = 305
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 174 RGGVGTC-RGDSGGPLVVTRNNRPILIGITSFG 79
RG + G SG P T P+L+G+T G
Sbjct: 63 RGALAAAGEGPSGSPATTTATEDPVLVGVTDEG 95
>02_05_0928 - 32796810-32797250
Length = 146
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 208 EGESKCANKVIYHVEVHVTED-LVCRYRSRAAGQTKARSD 324
EGE+ CANK + VE VT D V R R AA + D
Sbjct: 38 EGEAACANKRL-KVEATVTSDGAVVRQRHEAAVAARGYGD 76
>02_01_0743 -
5530184-5531078,5531160-5531405,5531815-5532450,
5534499-5534607,5536157-5536321,5536446-5536543,
5536648-5536898
Length = 799
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = -1
Query: 471 MHPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSS 292
+ P+WSPA IR+ + + + V + + + I L +F ++ G G S +
Sbjct: 595 LRPDWSPAAIRSAL----MTTAVEVDNERHAI-------LNSSFAAANPFGFGAGHVSPA 643
Query: 291 GSITTNQVLSHVNLDVINNFVCTFAFPFVLQSSNLCTSGRGGVGTCRGDSGGPLVVTRNN 112
++ V +D + NF+C+ ++ + + +G GG R + P V N
Sbjct: 644 RAMNPGLVYDLAAVDYL-NFLCSLSYNATVMA---MFAGGGGAAPFRCPASPPKVQDLNY 699
Query: 111 RPI-LIGITS 85
I ++ +TS
Sbjct: 700 PSITVVNLTS 709
>01_05_0394 + 21733751-21734584
Length = 277
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 291 GSITTNQVLSHVNLDVINNFVCTFAFPFVLQSSNLCTSGRGGVGTCRGDSGGPLVV 124
GS+ +Q + + ++ T ++ S L SGRG T D GG +V+
Sbjct: 7 GSVGHSQAIDDIPQFYASSCSATAYHSHAMEMSRLDASGRGSSRTAADDKGGHVVI 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,819,733
Number of Sequences: 37544
Number of extensions: 454505
Number of successful extensions: 1909
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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