Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e14r
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20060.1 68414.m02511 kinesin motor protein-related 33 0.16
At2g46180.1 68415.m05742 intracellular protein transport protein... 30 1.1
At2g28220.1 68415.m03426 aspartyl protease family protein contai... 30 1.1
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH... 29 3.5
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 29 3.5
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 28 4.6
At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein ... 28 4.6
At1g20160.1 68414.m02521 subtilase family protein similar to sub... 28 4.6
At4g33590.1 68417.m04772 hypothetical protein 28 6.1
At3g49640.1 68416.m05425 nitrogen regulation family protein simi... 28 6.1
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI... 28 6.1
At1g23790.1 68414.m03001 expressed protein 28 6.1
At5g38970.3 68418.m04714 cytochrome P450, putative similar to Cy... 27 8.0
At5g38970.1 68418.m04713 cytochrome P450, putative similar to Cy... 27 8.0
At3g23685.1 68416.m02978 F-box family protein contains TIGR01640... 27 8.0
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 27 8.0
At1g20150.1 68414.m02520 subtilase family protein similar to sub... 27 8.0
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +2
Query: 77 EPNDVIPIKIGRLFLVTTRGPPESPRQVPTPPRPLVHKFEDCKTKGKANVQTKLFITSRF 256
E N IP I + T + + PTP V +DC G +NVQTK I+ RF
Sbjct: 753 EENVGIPSTITHVEAEVTDFQRDQNQDDPTPSPEQVEVSQDCINSGLSNVQTKSAISRRF 812
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 370 KSDRIDCIRQSNGTG*VNDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKND 534
K R+D R SN +G N S+R NR +N+G A + +GT+ND
Sbjct: 124 KESRLDLSRASNNNAIKGNGDHSPNRSQRSPTNWKNRNQMNNG-IASKPNGTEND 177
>At2g28220.1 68415.m03426 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 756
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 366 SGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVI---NNFVCTFAFPFVLQS 196
SGQ + G++A+ +G G ++ I + ++NLD + +N + T PF +
Sbjct: 567 SGQGTSKINFGTNAIVAGDGTVAADMFIKKDNPFYYLNLDAVSVEDNLIATLGTPFHAED 626
Query: 195 SNL 187
N+
Sbjct: 627 GNI 629
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 366 SGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVI---NNFVCTFAFPFVLQS 196
SGQ + G++A+ +G G ++ I + ++NLD + +N + T PF +
Sbjct: 228 SGQGTSKINFGTNAIVAGDGTVAADMFIKKDNPFYYLNLDAVSVEDNRIETLGTPFHAED 287
Query: 195 SNL 187
N+
Sbjct: 288 GNI 290
>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
(CHX16) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 847
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 414 PSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINN 235
PS + + + + LP + +EN SSAV F +S S++ V + L I+
Sbjct: 554 PSSIRMVQKVRSNGLPFWNKKREN---SSAVTVAFEASSKLSSVSVRSVTAISPLSTIHE 610
Query: 234 FVCTFA 217
+C+ A
Sbjct: 611 DICSSA 616
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 211 LRLAIFKLMHKWTRWCRHLPW*--LRWPSCCYKKQPS--YLDWYYIIW 80
+R + K + WC++L LR+P+ C K+Q S Y+ Y +IW
Sbjct: 303 VRKLMEKYFKNYNSWCKYLRCDSYLRFPAGCDKQQLSLLYIGLYLLIW 350
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 68 PRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPPRPLVH 187
PRP P P T+ PP P P PP P+VH
Sbjct: 687 PRPPPPPPPP---PMQHSTVTKVPPPPPPAPPAPPTPIVH 723
>At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein
contains Pfam profile PF04410: Gar1 protein RNA binding
region
Length = 202
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 210 FVLQSSNLCTSGRGGVGTCRGDSGG 136
F+ Q T GRGG G RGDS G
Sbjct: 143 FLPQPKGQSTGGRGGAGRGRGDSRG 167
>At1g20160.1 68414.m02521 subtilase family protein similar to
subtilisin-type protease precursor GI:14150446 from
[Glycine max]
Length = 769
Score = 28.3 bits (60), Expect = 4.6
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = -1
Query: 468 HPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSG 289
HP W P+ IR+ + T + T N G E ++ SG G SS+
Sbjct: 563 HPTWGPSAIRSAIM-------TTATQTNN----DKGLITTETGATATPYDSGAGELSSTA 611
Query: 288 SITTNQVLSHVNLDVINNFVCTFAFPFVLQSSNLCTSGRGGVGTCRGDSGGPLVVTRNNR 109
S+ V D + NF+C + + + + + TC DS L+ T N
Sbjct: 612 SMQPGLVYETTETDYL-NFLCYYGYN--VTTIKAMSKAFPENFTCPADSNLDLISTINYP 668
Query: 108 PILIGITSF-GSG 73
IGI+ F G+G
Sbjct: 669 S--IGISGFKGNG 679
>At4g33590.1 68417.m04772 hypothetical protein
Length = 466
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 400 FV*YNQYDRSSKWTGITRKLCWILGSRFWLWSDQQLWI 287
FV YNQYD + W G+T + +I S Q W+
Sbjct: 164 FVSYNQYDYGNLWHGLTAVVPFIAWSLRNQCEKPQKWV 201
>At3g49640.1 68416.m05425 nitrogen regulation family protein similar
to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111)
[Rhodobacter capsulatus]; contains Pfam domain PF01207:
Dihydrouridine synthase (Dus)
Length = 519
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 354 LQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTF 220
+++N+V + L SSSG + T ++ + V FV TF
Sbjct: 162 MKQNYVMQDKIVRSLSLKSSSGELETYSLMWSLRPGVFEFFVATF 206
>At2g28390.1 68415.m03450 SAND family protein similar to Sand
(GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
SAND family protein
Length = 607
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 504 GGTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTI 376
GGT SS+V +W+PAT + A LP P L TI
Sbjct: 293 GGTDAVFSSLVHSFSWNPATFLH--AYTCLPLPYALRQATGTI 333
>At1g23790.1 68414.m03001 expressed protein
Length = 518
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 213 PFVLQSSNL----CTSGRGGVGTCRGDSGGPLVVTRNNRPILIGITSFGSGLGCQVNLPA 46
PFVL+ + L CT + +GT R + P V+TR P + + G L PA
Sbjct: 145 PFVLKPAPLDFDQCTPAKHRLGTGRFMAASPNVMTRGRSPGGVRCSYGGGLLSKMAESPA 204
Query: 45 AYAR 34
A R
Sbjct: 205 AMMR 208
>At5g38970.3 68418.m04714 cytochrome P450, putative similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 419
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 589 IDSCSLLVRWHQPRHERNG 533
+ CS L+RW+Q R+ +NG
Sbjct: 15 VSLCSALLRWNQMRYTKNG 33
>At5g38970.1 68418.m04713 cytochrome P450, putative similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 465
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 589 IDSCSLLVRWHQPRHERNG 533
+ CS L+RW+Q R+ +NG
Sbjct: 15 VSLCSALLRWNQMRYTKNG 33
>At3g23685.1 68416.m02978 F-box family protein contains TIGR01640:
F-box protein interaction domain
Length = 330
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 184 HKWTRWCRHLPW*LRWPSCCYKKQPSYLDWYY 89
H W R+ L + + SCCY K +D+YY
Sbjct: 93 HGWDRFSYALGY-VNTDSCCYYKLLGLIDYYY 123
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 369 PSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDV 244
P+G L +FV + ++SGF + G + ++ HV+LDV
Sbjct: 307 PNGP-LSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLDV 347
>At1g20150.1 68414.m02520 subtilase family protein similar to
subtilisin-type protease precursor GI:14150446 from
[Glycine max]
Length = 780
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -1
Query: 468 HPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSG 289
+P+WSPA IR+ + + + V +++T + I +G++ G+ V FG SS G
Sbjct: 567 YPSWSPAAIRSAI----MTTAVQMTNTGSHITTETGEKATPYDFGAGQVTI-FG-PSSPG 620
Query: 288 SITTNQVLSHVN 253
I + ++N
Sbjct: 621 LIYETNHMDYLN 632
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,308
Number of Sequences: 28952
Number of extensions: 341952
Number of successful extensions: 1221
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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