Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e13r
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    31   0.10 
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   3.0  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   5.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   6.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   9.0  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    24   9.0  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 230 RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVYL 343
           +F K  PTP  VR  LAN V    +      P  A+Y+
Sbjct: 254 KFAKTSPTPDQVREVLANYVSEPQKLGCYSAPKQAIYV 291


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 69  RESLIKKMGRTNFLCKRKNKN-FVSLHVNVQN 161
           R  L+  +GR  F+CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 66  IRESLIKKMGRTNFLCKRK 122
           +R+ +IKK    NFLC  K
Sbjct: 171 VRDKIIKKCAEVNFLCIHK 189


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 432 LTIDSEYQYKFPASFVVSRAAT 367
           L+ D+EY+Y FP++   +  AT
Sbjct: 133 LSSDAEYEYGFPSTHTTNAMAT 154


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 426 IDSEYQYKFPASFVVSRAATTNSRA 352
           ++SE  Y+F A  VVS   +TNS A
Sbjct: 520 VNSEIYYRFLAQDVVSDHKSTNSSA 544


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 269 RTLANCVDPRTRTALTRL--PAGAVYLTLTAR 358
           + +A C DP T  AL RL   AG  ++ L AR
Sbjct: 273 KLIAACDDPETFRALGRLFAEAGEAWVVLIAR 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,810
Number of Sequences: 5004
Number of extensions: 30388
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)