Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e13r
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0382 - 5076673-5077774,5078122-5078186                           29   1.3  
02_02_0282 - 8540726-8541106                                           29   1.3  
03_01_0031 + 292335-292844                                             28   3.8  
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    27   6.7  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   6.7  
07_03_1145 + 24335746-24336299,24336967-24337105,24337634-243376...    27   8.8  

>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 239 KVKPTPPPVRRTLANCVDPRTRTALTRLP 325
           K  PTPPP RR   N +D R +    RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284


>02_02_0282 - 8540726-8541106
          Length = 126

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 261 GGGVGFTFVNLQFVNAPRRGFSFTVQ 184
           GGGV  TF+  QFV +   GF   VQ
Sbjct: 12  GGGVKVTFIETQFVTSDAAGFKSLVQ 37


>03_01_0031 + 292335-292844
          Length = 169

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 286 RRSSDADGPDAS-TGRRRVPHVDSPRVSCSSTAHNKACRKLVLVLR 420
           R S D  G  +   GRRR PH D      +  A   A R+LV+ +R
Sbjct: 85  RSSEDCRGGSSELAGRRRGPHGDGSAEPTARAAAASARRRLVVAVR 130


>06_01_0609 +
           4404287-4405023,4405496-4405631,4405724-4405876,
           4405985-4406128,4406224-4406375,4406453-4406552,
           4406653-4406775,4406876-4407037,4407190-4407247,
           4407324-4407502,4408294-4408402,4408567-4408637,
           4408891-4408986,4409727-4409803,4410983-4411066,
           4411473-4411607,4411744-4411819,4413072-4413167,
           4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 236 TKVKPTPPPVRRTLANCVDPRTRT 307
           T VKPTP P R+  A    P+T T
Sbjct: 78  TPVKPTPTPKRKRAAPSPSPKTPT 101


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 233 FTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGA 334
           F+  +  P P+RR +A+C+ P      T  P  A
Sbjct: 32  FSSARKPPEPLRRAVADCLSPPAPHTHTHAPPPA 65


>07_03_1145 +
           24335746-24336299,24336967-24337105,24337634-24337695,
           24338140-24338278,24338692-24338829
          Length = 343

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 LRRSSDADGPDASTGRRRVPHVDSPRVS 366
           L+R +D D P    GRR  P++D+ R +
Sbjct: 83  LQRRADGDFPPGGAGRRWFPYLDAFRAA 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,259
Number of Sequences: 37544
Number of extensions: 200103
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)