Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e13r
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.       28   3.5  
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    27   4.6  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
          Length = 1666

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 276  SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 148
            ++R+ GGG+G + V  Q V   + G      V G   A+ GRL
Sbjct: 974  TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1016


>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
            protein W03F11.6e protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 276  SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 148
            ++R+ GGG+G + V  Q V   + G      V G   A+ GRL
Sbjct: 972  TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014


>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
            protein W03F11.6d protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 276  SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 148
            ++R+ GGG+G + V  Q V   + G      V G   A+ GRL
Sbjct: 972  TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014


>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
            protein W03F11.6c protein.
          Length = 1419

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 276  SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 148
            ++R+ GGG+G + V  Q V   + G      V G   A+ GRL
Sbjct: 972  TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014


>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
            protein W03F11.6a protein.
          Length = 1658

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 276  SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 148
            ++R+ GGG+G + V  Q V   + G      V G   A+ GRL
Sbjct: 972  TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = -2

Query: 178 GTLKCIFWTFTCKDTKFLFFRLHKKFVLPIF--LINDSRIYYEASLSFFFG 32
           GT+    W  +C  T FLF        LP +  LI     Y+   LS  +G
Sbjct: 111 GTIVLTTWCTSCACTLFLFINRIVNITLPQYSDLIEAKLAYFSIILSIIYG 161


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 397 CKLCCEPCCYN*LAGCQREVHGA--CR*TRQGRPRPRID 287
           C  CC PCC     GC     G    + T   RP+P I+
Sbjct: 112 CCTCCRPCCCGCGCGCCGCGGGGHFLKSTAMARPKPLIE 150


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +2

Query: 191  VKLNPLRGAFTN*RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVYLTLTARELVV 370
            ++ + + G +T+  +T   PTPPP     +   D   R  L+R      ++    RE  V
Sbjct: 2084 IQASDVEGFWTDGAYTDSAPTPPPQPIHRSTAEDNMQRIGLSRTTTEPEFIKAFEREYTV 2143


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 172 LKCIFWTF-TCKDTKFLFFRLHKKFVLPIFLINDSRIYYEASLSFFF 35
           L C   TF +  +TK   +  H + V+ IF+I  S  +     +FFF
Sbjct: 161 LICTLLTFYSATETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFF 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,336,137
Number of Sequences: 27780
Number of extensions: 180265
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)